View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19470_low_1 (Length: 638)
Name: NF19470_low_1
Description: NF19470
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19470_low_1 |
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Alignment Details
Target: chr5 (Bit Score: 465; Significance: 0; HSPs: 5)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 465; E-Value: 0
Query Start/End: Original strand, 20 - 636
Target Start/End: Original strand, 27001695 - 27002315
Alignment:
| Q |
20 |
agtgattgatcatcaatcacgcaaaagaaaaattgttacgctcttttatggacaatggacccaaaagctagtggcataccttgtacaaaggatacacagc |
119 |
Q |
| |
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||||||||||||||||||||||||||||||| ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
27001695 |
agtgattgatcatcaatcacgcaaaagaaaagttgttacgctcttccatggacaatggacccaaaagctagtggcataccttgtacaaaggatacacagc |
27001794 |
T |
|
| Q |
120 |
tttgtcgttttgtttcatagctttgctgtta-ttgtcccaaatctatgaactcatgcaaactggaataataaaatatcaacgcgtaatatagctggcgca |
218 |
Q |
| |
|
|||||||||| |||||||| | |||||||| |||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| || |
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| T |
27001795 |
tttgtcgtttggtttcatacatgtgctgttaattgtcccaaatctatgaattcatgcaaactggaataataaaatatcaacgcgtaatatagctggcaca |
27001894 |
T |
|
| Q |
219 |
tcctccactcaccctccaacataatttgacttcaact-----cctttctattttacacgttaatt----ccttttcaatacactttccacnnnnnnnnnn |
309 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |||||| |||||||||||||| |
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| T |
27001895 |
tcctccactcaccctccaacataatttgacttcaactatatacctttctattttacacgttaattaattccttttaaatacactttccactatatatata |
27001994 |
T |
|
| Q |
310 |
nnnnnncctacaaccccatcttacatttccatcagaacataacatttccacattccttctacttcatactttgttctatctcaatacatatcccaaatga |
409 |
Q |
| |
|
||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
27001995 |
------cctacaaccccatcttacatttccatcagcacataacatttccacattccttctacttcatactttgttctatctcaatacatatcccaaatgg |
27002088 |
T |
|
| Q |
410 |
catcttttaagttaagttcaatctttactctttttctcacaatttcactacttcatttaatctcagctgctagaaaactcactgaatcggaccaacaact |
509 |
Q |
| |
|
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| ||||||||||| |
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|
| T |
27002089 |
catcttttaagttaagtgcaatctttactctttttctcacaatttcactacttcatttaatctcagctgctagaaaattcactgaatcagaccaacaact |
27002188 |
T |
|
| Q |
510 |
taaatttcaataccacaaaggccctcttctcaccggaaaaatctcaatcaacctcatttggtatggaaaattcaaaccatctcaacgagccatcataact |
609 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
27002189 |
taaatttcaataccacaaaggccctcttctcaccggaaaaatctcaatcaacctcatttggtatggaaaattcaaaccatctcaacgagccatcataact |
27002288 |
T |
|
| Q |
610 |
gatttcataacctccctctctgctcct |
636 |
Q |
| |
|
||||||||||||||||||||| ||||| |
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| T |
27002289 |
gatttcataacctccctctcttctcct |
27002315 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 141; E-Value: 1e-73
Query Start/End: Original strand, 316 - 623
Target Start/End: Original strand, 26995733 - 26996027
Alignment:
| Q |
316 |
cctacaaccccatcttacatttccatcagaacataacatttccacattcc-ttctacttcatactttgttctatctcaatacatatcccaaatgacatct |
414 |
Q |
| |
|
|||||||| |||||||||||||||||| || |||||||||||||||| |||||||||||||||||||||||||||| |||| ||||| |
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|
| T |
26995733 |
cctacaactacatcttacatttccatcacctcacaacatttccacattcccttctacttcatactttgttctatctcaa-----------aatggcatct |
26995821 |
T |
|
| Q |
415 |
tttaagttaagttcaatctttactctttttctcacaatttcactacttcatttaatctcagctgctagaaaactcactgaatcggaccaacaacttaaat |
514 |
Q |
| |
|
|||||||||||| ||||| || |||||||||||||||||||||||||| || | ||| ||||| |||||||||||||| |||||||||||||||| |
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|
| T |
26995822 |
tttaagttaagtgttatcttcaccctttttctcacaatttcactacttcaattgagttca---gctaggaaactcactgaatcagaccaacaacttaaat |
26995918 |
T |
|
| Q |
515 |
ttcaataccacaaaggccctcttctcaccggaaaaatctcaatcaacctcatttggtatggaaaattcaaaccatctcaacgagccatcataactgattt |
614 |
Q |
| |
|
|||||| |||||||||||||||||| ||||| ||||| || | ||||| ||||||||||||||||||||||||||||||||||| |||||||||||||| |
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|
| T |
26995919 |
ttcaattccacaaaggccctcttctaaccggtaaaatttctgtaaaccttatttggtatggaaaattcaaaccatctcaacgagcgatcataactgattt |
26996018 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 124; E-Value: 2e-63
Query Start/End: Original strand, 20 - 230
Target Start/End: Original strand, 26995472 - 26995689
Alignment:
| Q |
20 |
agtgattgatcatcaatcacgcaaaagaaaaattgttacgctcttttatggacaatggacccaaaagctagtggcataccttgtacaaaggatacacagc |
119 |
Q |
| |
|
||||||||||||||||||||||||||||| | ||||||||||||| ||||| |||||||||||||||||| ||||| |||||||||||| ||||||||| |
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|
| T |
26995472 |
agtgattgatcatcaatcacgcaaaagaagagttgttacgctcttcgatggagaatggacccaaaagctaggggcatgccttgtacaaagaatacacagc |
26995571 |
T |
|
| Q |
120 |
tttgtcgttttgtttcatagctttg-------ctgttattgtcccaaatctatgaactcatgcaaactggaataataaaatatcaacgcgtaatatagct |
212 |
Q |
| |
|
|||||||||||||||||||||| || |||||| ||||||||||| ||||| |||||||||||||||||| |||||| |||||||| |||||||| |
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|
| T |
26995572 |
tttgtcgttttgtttcatagctgtgctgttgcctgttactgtcccaaatcaatgaattcatgcaaactggaataacaaaataacaacgcgtgatatagct |
26995671 |
T |
|
| Q |
213 |
ggcgcatcctccactcac |
230 |
Q |
| |
|
||| ||||| |||||||| |
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|
| T |
26995672 |
ggcacatccaccactcac |
26995689 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 122; E-Value: 3e-62
Query Start/End: Original strand, 428 - 623
Target Start/End: Original strand, 26721391 - 26721583
Alignment:
| Q |
428 |
caatctttactctttttctcacaatttcactacttcatttaatctcagctgctagaaaactcactgaatcggaccaacaacttaaatttcaataccacaa |
527 |
Q |
| |
|
||||||| | ||||||||||||||||||||||||||| || | ||| ||||| |||||||||||||| ||||||||||||||||||||||||||||| |
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|
| T |
26721391 |
caatcttcattctttttctcacaatttcactacttcaattgagttca---gctaggaaactcactgaatcagaccaacaacttaaatttcaataccacaa |
26721487 |
T |
|
| Q |
528 |
aggccctcttctcaccggaaaaatctcaatcaacctcatttggtatggaaaattcaaaccatctcaacgagccatcataactgatttcataacctc |
623 |
Q |
| |
|
|||||||||||| ||||| ||||| ||| | ||||||||||||||||||||||||||||||||||||||||| || |||||||||||||||||||| |
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|
| T |
26721488 |
aggccctcttctaaccggtaaaatttcagtaaacctcatttggtatggaaaattcaaaccatctcaacgagcgattataactgatttcataacctc |
26721583 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 122; E-Value: 3e-62
Query Start/End: Original strand, 428 - 623
Target Start/End: Original strand, 26991140 - 26991332
Alignment:
| Q |
428 |
caatctttactctttttctcacaatttcactacttcatttaatctcagctgctagaaaactcactgaatcggaccaacaacttaaatttcaataccacaa |
527 |
Q |
| |
|
||||||| | ||||||||||||||||||||||||||| || | ||| ||||| |||||||||||||| ||||||||||||||||||||||||||||| |
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|
| T |
26991140 |
caatcttcattctttttctcacaatttcactacttcaattgagttca---gctaggaaactcactgaatcagaccaacaacttaaatttcaataccacaa |
26991236 |
T |
|
| Q |
528 |
aggccctcttctcaccggaaaaatctcaatcaacctcatttggtatggaaaattcaaaccatctcaacgagccatcataactgatttcataacctc |
623 |
Q |
| |
|
|||||||||||| ||||| ||||| ||| | ||||||||||||||||||||||||||||||||||||||||| || |||||||||||||||||||| |
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|
| T |
26991237 |
aggccctcttctaaccggtaaaatttcagtaaacctcatttggtatggaaaattcaaaccatctcaacgagcgattataactgatttcataacctc |
26991332 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 59; Significance: 1e-24; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 59; E-Value: 1e-24
Query Start/End: Original strand, 499 - 617
Target Start/End: Original strand, 33820965 - 33821083
Alignment:
| Q |
499 |
gaccaacaacttaaatttcaataccacaaaggccctcttctcaccggaaaaatctcaatcaacctcatttggtatggaaaattcaaaccatctcaacgag |
598 |
Q |
| |
|
||||||||| | || || |||||||||||||||||||||||||||||||||||||| ||||| ||| | ||||| || |||||||| ||||| ||||||| |
|
|
| T |
33820965 |
gaccaacaattaaagttccaataccacaaaggccctcttctcaccggaaaaatctccatcaatctcgtatggtacggtaaattcaatccatcccaacgag |
33821064 |
T |
|
| Q |
599 |
ccatcataactgatttcat |
617 |
Q |
| |
|
|||| || |||||||||| |
|
|
| T |
33821065 |
ccataatctctgatttcat |
33821083 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 55; E-Value: 3e-22
Query Start/End: Original strand, 499 - 617
Target Start/End: Original strand, 33828193 - 33828311
Alignment:
| Q |
499 |
gaccaacaacttaaatttcaataccacaaaggccctcttctcaccggaaaaatctcaatcaacctcatttggtatggaaaattcaaaccatctcaacgag |
598 |
Q |
| |
|
||||||||| | || || |||||||||||||||||||||||||||||||||||||| ||||| ||||| |||||||| |||||||| || | ||||| | |
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|
| T |
33828193 |
gaccaacaattaaagttccaataccacaaaggccctcttctcaccggaaaaatctccatcaatctcatatggtatggtaaattcaatcctacccaacgtg |
33828292 |
T |
|
| Q |
599 |
ccatcataactgatttcat |
617 |
Q |
| |
|
|||| || |||||||||| |
|
|
| T |
33828293 |
ccataatctctgatttcat |
33828311 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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