View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF19470_low_10 (Length: 352)

Name: NF19470_low_10
Description: NF19470
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF19470_low_10
NF19470_low_10
[»] chr2 (3 HSPs)
chr2 (187-333)||(13294249-13294395)
chr2 (265-326)||(10862736-10862796)
chr2 (267-327)||(10863083-10863142)
[»] chr4 (8 HSPs)
chr4 (5-111)||(35036914-35037020)
chr4 (122-216)||(35036745-35036845)
chr4 (264-316)||(9477536-9477588)
chr4 (265-316)||(47785908-47785959)
chr4 (274-340)||(7834662-7834727)
chr4 (56-94)||(35037203-35037241)
chr4 (267-316)||(5815049-5815098)
chr4 (271-316)||(15450594-15450639)
[»] chr7 (3 HSPs)
chr7 (187-255)||(1399648-1399716)
chr7 (264-316)||(43439329-43439381)
chr7 (265-327)||(2658297-2658357)
[»] chr8 (2 HSPs)
chr8 (191-256)||(10096103-10096168)
chr8 (267-315)||(4203055-4203103)
[»] chr6 (2 HSPs)
chr6 (187-250)||(11529644-11529707)
chr6 (187-251)||(11550090-11550154)
[»] chr1 (4 HSPs)
chr1 (267-316)||(46835296-46835345)
chr1 (267-327)||(12458519-12458578)
chr1 (266-315)||(52853891-52853940)
chr1 (264-316)||(32709031-32709083)
[»] chr5 (1 HSPs)
chr5 (265-325)||(10142155-10142214)
[»] chr3 (1 HSPs)
chr3 (265-325)||(27065540-27065599)


Alignment Details
Target: chr2 (Bit Score: 123; Significance: 4e-63; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 123; E-Value: 4e-63
Query Start/End: Original strand, 187 - 333
Target Start/End: Original strand, 13294249 - 13294395
Alignment:
Q  187 agttaattaaatgaaacttacaaaattacctttcaatttaaatttggtttggacagtgataaatgaacttcttgaagcaagtggatgtagcttgctaatt 286  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| ||| ||||||||| ||| |||||    
T  13294249 agttaattaaatgaaacttacaaaattacctttcaatttaaatttggtttgaacagtgataaatgaacttcttgaatcaaatggatgtagtttgttaatt 13294348  T
Q  287 tacactttagtctttttaggtgagtgtaaaattagcagcccccattt 333  Q
    ||||||||||||||||||||||||||||||||||||||| |||||||    
T  13294349 tacactttagtctttttaggtgagtgtaaaattagcagctcccattt 13294395  T

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Target: chr2; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 265 - 326
Target Start/End: Complemental strand, 10862796 - 10862736
Alignment:
Q  265 aagtggatgtagcttgctaatttacactttagtctttttaggtgagtgtaaaattagcagcc 326  Q
    |||||| |||||||||||||||||||| ||||| |||||||||| |||| ||||||||||||    
T  10862796 aagtgggtgtagcttgctaatttacaccttagtgtttttaggtgggtgt-aaattagcagcc 10862736  T

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Target: chr2; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 267 - 327
Target Start/End: Original strand, 10863083 - 10863142
Alignment:
Q  267 gtggatgtagcttgctaatttacactttagtctttttaggtgagtgtaaaattagcagccc 327  Q
    |||| |||||| ||||||||||||| ||||| |||||||||| |||| |||||||||||||    
T  10863083 gtgggtgtagcctgctaatttacaccttagtgtttttaggtgggtgt-aaattagcagccc 10863142  T

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Target: chr4 (Bit Score: 103; Significance: 3e-51; HSPs: 8)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 103; E-Value: 3e-51
Query Start/End: Original strand, 5 - 111
Target Start/End: Complemental strand, 35037020 - 35036914
Alignment:
Q  5 tcatgtaacattttccttttgaaaattattgtgaatagtttgaaaattggatttagctattgaggtattttctctatattcgtgtattttctctagtagt 104  Q
    |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  35037020 tcatgtaacatttttcttttgaaaattattgtgaatagtttgaaaattggatttagctattgaggtattttctctatattcgtgtattttctctagtagt 35036921  T
Q  105 ggcagct 111  Q
    |||||||    
T  35036920 ggcagct 35036914  T

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Target: chr4; HSP #2
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 122 - 216
Target Start/End: Complemental strand, 35036845 - 35036745
Alignment:
Q  122 tactagtatgaaattatattagttgttagcttaata-at-----acattgaaaagggattttagnnnnnnnagttaattaaatgaaacttacaaaattac 215  Q
    |||||||||||||||||||||||||||||||||||| ||     | ||||||||| |||||| |       |||||||||||||||||||||||||||||    
T  35036845 tactagtatgaaattatattagttgttagcttaatacatccatgatattgaaaagagatttttgtttttttagttaattaaatgaaacttacaaaattac 35036746  T
Q  216 c 216  Q
    |    
T  35036745 c 35036745  T

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Target: chr4; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 264 - 316
Target Start/End: Original strand, 9477536 - 9477588
Alignment:
Q  264 caagtggatgtagcttgctaatttacactttagtctttttaggtgagtgtaaa 316  Q
    ||||||| ||||||||||||||||| || ||||| |||||||||| |||||||    
T  9477536 caagtgggtgtagcttgctaatttaaaccttagtgtttttaggtgggtgtaaa 9477588  T

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Target: chr4; HSP #4
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 265 - 316
Target Start/End: Complemental strand, 47785959 - 47785908
Alignment:
Q  265 aagtggatgtagcttgctaatttacactttagtctttttaggtgagtgtaaa 316  Q
    |||||||||||| |||||||||||||| ||| |  |||||||||||||||||    
T  47785959 aagtggatgtagattgctaatttacaccttattggttttaggtgagtgtaaa 47785908  T

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Target: chr4; HSP #5
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 274 - 340
Target Start/End: Original strand, 7834662 - 7834727
Alignment:
Q  274 tagcttgctaatttacactttagtctttttaggtgagtgtaaaattagcagcccccatttatttatt 340  Q
    |||||||||||| ||||| || || |||||||||| |||| ||||||||||||||||| ||| ||||    
T  7834662 tagcttgctaatgtacaccttcgtgtttttaggtgggtgt-aaattagcagcccccatatatatatt 7834727  T

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Target: chr4; HSP #6
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 56 - 94
Target Start/End: Complemental strand, 35037241 - 35037203
Alignment:
Q  56 tttagctattgaggtattttctctatattcgtgtatttt 94  Q
    ||||||||||||||||||||||||||| ||||| |||||    
T  35037241 tttagctattgaggtattttctctatactcgtgaatttt 35037203  T

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Target: chr4; HSP #7
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 267 - 316
Target Start/End: Original strand, 5815049 - 5815098
Alignment:
Q  267 gtggatgtagcttgctaatttacactttagtctttttaggtgagtgtaaa 316  Q
    |||||||||||||| |||||||| | ||||| |||||||||| |||||||    
T  5815049 gtggatgtagcttgttaatttactccttagtatttttaggtgggtgtaaa 5815098  T

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Target: chr4; HSP #8
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 271 - 316
Target Start/End: Original strand, 15450594 - 15450639
Alignment:
Q  271 atgtagcttgctaatttacactttagtctttttaggtgagtgtaaa 316  Q
    ||||||||||||||||||||| ||||| |||||||||  |||||||    
T  15450594 atgtagcttgctaatttacaccttagtatttttaggttggtgtaaa 15450639  T

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Target: chr7 (Bit Score: 41; Significance: 0.00000000000003; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 187 - 255
Target Start/End: Original strand, 1399648 - 1399716
Alignment:
Q  187 agttaattaaatgaaacttacaaaattacctttcaatttaaatttggtttggacagtgataaatgaact 255  Q
    |||||||||||| ||||||||||||||||||||||||||||| ||| |||| |  |||| |||||||||    
T  1399648 agttaattaaataaaacttacaaaattacctttcaatttaaagttgatttgaatggtgacaaatgaact 1399716  T

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Target: chr7; HSP #2
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 264 - 316
Target Start/End: Complemental strand, 43439381 - 43439329
Alignment:
Q  264 caagtggatgtagcttgctaatttacactttagtctttttaggtgagtgtaaa 316  Q
    ||||| |||||||||||||||||||||| ||||| |||||||||| |||||||    
T  43439381 caagtagatgtagcttgctaatttacaccttagtgtttttaggtgggtgtaaa 43439329  T

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Target: chr7; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 265 - 327
Target Start/End: Complemental strand, 2658357 - 2658297
Alignment:
Q  265 aagtggatgtagcttgctaatttacactttagtctttttaggtgagtgtaaaattagcagccc 327  Q
    |||||| |||||||||||||||||||| ||||| |||||| ||| |||| |||||||||||||    
T  2658357 aagtgggtgtagcttgctaatttacaccttagtgttttta-gtgggtgt-aaattagcagccc 2658297  T

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Target: chr8 (Bit Score: 38; Significance: 0.000000000002; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 191 - 256
Target Start/End: Complemental strand, 10096168 - 10096103
Alignment:
Q  191 aattaaatgaaacttacaaaattacctttcaatttaaatttggtttggacagtgataaatgaactt 256  Q
    |||||||||||||||||||||||||| ||||||||||  || ||||| | ||||| ||||||||||    
T  10096168 aattaaatgaaacttacaaaattacccttcaatttaacatttgtttgaatagtgacaaatgaactt 10096103  T

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Target: chr8; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 267 - 315
Target Start/End: Complemental strand, 4203103 - 4203055
Alignment:
Q  267 gtggatgtagcttgctaatttacactttagtctttttaggtgagtgtaa 315  Q
    |||| |||||||||||||||| ||| ||||| |||||||||||||||||    
T  4203103 gtgggtgtagcttgctaatttgcaccttagtatttttaggtgagtgtaa 4203055  T

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Target: chr6 (Bit Score: 36; Significance: 0.00000000003; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 187 - 250
Target Start/End: Original strand, 11529644 - 11529707
Alignment:
Q  187 agttaattaaatgaaacttacaaaattacctttcaatttaaatttggtttggacagtgataaat 250  Q
    |||||||||||||||| ||||||||||||| ||||||||||  |||||||| | ||||| ||||    
T  11529644 agttaattaaatgaaatttacaaaattacccttcaatttaagattggtttgaatagtgacaaat 11529707  T

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Target: chr6; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 187 - 251
Target Start/End: Original strand, 11550090 - 11550154
Alignment:
Q  187 agttaattaaatgaaacttacaaaattacctttcaatttaaatttggtttggacagtgataaatg 251  Q
    |||||||||||||||| ||||||||||||  ||||||||||  |||||||| | ||||| |||||    
T  11550090 agttaattaaatgaaatttacaaaattactcttcaatttaagattggtttgaatagtgacaaatg 11550154  T

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Target: chr1 (Bit Score: 34; Significance: 0.0000000005; HSPs: 4)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 267 - 316
Target Start/End: Original strand, 46835296 - 46835345
Alignment:
Q  267 gtggatgtagcttgctaatttacactttagtctttttaggtgagtgtaaa 316  Q
    ||||||||||||||||||||||||| ||| | |||||||||| |||||||    
T  46835296 gtggatgtagcttgctaatttacaccttaatgtttttaggtgtgtgtaaa 46835345  T

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Target: chr1; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 267 - 327
Target Start/End: Original strand, 12458519 - 12458578
Alignment:
Q  267 gtggatgtagcttgctaatttacactttagtctttttaggtgagtgtaaaattagcagccc 327  Q
    |||| |||| ||||||||||||||| ||||| |||||||||| |||| |||||||||||||    
T  12458519 gtgggtgtaacttgctaatttacaccttagtgtttttaggtgggtgt-aaattagcagccc 12458578  T

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Target: chr1; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 266 - 315
Target Start/End: Original strand, 52853891 - 52853940
Alignment:
Q  266 agtggatgtagcttgctaatttacactttagtctttttaggtgagtgtaa 315  Q
    ||||||||||||||||||| || ||| ||||| |||||||||| ||||||    
T  52853891 agtggatgtagcttgctaacttgcaccttagtgtttttaggtgggtgtaa 52853940  T

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Target: chr1; HSP #4
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 264 - 316
Target Start/End: Original strand, 32709031 - 32709083
Alignment:
Q  264 caagtggatgtagcttgctaatttacactttagtctttttaggtgagtgtaaa 316  Q
    ||||||||||||  ||||||| |||||| ||||| ||||||| ||||||||||    
T  32709031 caagtggatgtatgttgctaacttacaccttagtgtttttagatgagtgtaaa 32709083  T

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Target: chr5 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 265 - 325
Target Start/End: Complemental strand, 10142214 - 10142155
Alignment:
Q  265 aagtggatgtagcttgctaatttacactttagtctttttaggtgagtgtaaaattagcagc 325  Q
    |||||| |||||||||||||||||||| ||||| ||||||| || |||| |||||||||||    
T  10142214 aagtgggtgtagcttgctaatttacaccttagtatttttagatgggtgt-aaattagcagc 10142155  T

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Target: chr3 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 265 - 325
Target Start/End: Original strand, 27065540 - 27065599
Alignment:
Q  265 aagtggatgtagcttgctaatttacactttagtctttttaggtgagtgtaaaattagcagc 325  Q
    |||||| |||||||||||||||||||| ||| | |||||||||| || | |||||||||||    
T  27065540 aagtgggtgtagcttgctaatttacaccttactgtttttaggtgggtat-aaattagcagc 27065599  T

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