View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19470_low_12 (Length: 344)
Name: NF19470_low_12
Description: NF19470
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19470_low_12 |
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Alignment Details
Target: chr4 (Bit Score: 187; Significance: 1e-101; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 187; E-Value: 1e-101
Query Start/End: Original strand, 12 - 330
Target Start/End: Original strand, 25899361 - 25899688
Alignment:
| Q |
12 |
atcatcatgtccttaacttcgacagaaggattgaagcaaatcaatgtatcaggaccttgcc-attctcatttcaagtttaacctttcataatcacacaat |
110 |
Q |
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|||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |
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| T |
25899361 |
atcatcatgtccttaagatcgacagaaggattgaagcaaatcaatgtatcaggaccttgcccattctcatttcaagtttaacctttcataatcacacaat |
25899460 |
T |
|
| Q |
111 |
ctagggaaattagtatgcnnnnnnnnnnc----ccatggctatnnnnnnncttaaccatcacaggtcactaatcaataa----gaagagcaggaaataag |
202 |
Q |
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|||||||||||||||||| ||||||| || ||||||||||||||||||||||||||| | ||||| ||||||||||| |
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| T |
25899461 |
ctagggaaattagtatgcaaaaaaaaaaaaaaaccatggcgataaaaaaacttaaccatcacaggtcactaatcaatcaatatgaagatcaggaaataag |
25899560 |
T |
|
| Q |
203 |
gctatgaaataagagatagttgtgcttaccgtcaaatcgcaaccttggcagtaagagccacattttccgccatgagctgtcgtattttgattgaagtatc |
302 |
Q |
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|||||| ||||||||||||||||||||||| |||||||||||||||||| ||||||||||||||||||||||||||| |||||||||||||||||||||| |
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| T |
25899561 |
gctatgcaataagagatagttgtgcttaccatcaaatcgcaaccttggccgtaagagccacattttccgccatgagccgtcgtattttgattgaagtatc |
25899660 |
T |
|
| Q |
303 |
ttataattttcaaccgctccagagagct |
330 |
Q |
| |
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||||| |||||||||||| ||||||||| |
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| T |
25899661 |
ttatagttttcaaccgcttcagagagct |
25899688 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 68 - 128
Target Start/End: Original strand, 37616721 - 37616781
Alignment:
| Q |
68 |
ttgccattctcatttcaagtttaacctttcataatcacacaatctagggaaattagtatgc |
128 |
Q |
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| T |
37616721 |
ttgccattctcatttcaagtttaaccttccataatcacacaatctagggaaaatagtatgc |
37616781 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 126; Significance: 6e-65; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 126; E-Value: 6e-65
Query Start/End: Original strand, 157 - 330
Target Start/End: Complemental strand, 40068747 - 40068574
Alignment:
| Q |
157 |
cttaaccatcacaggtcactaatcaataagaagagcaggaaataaggctatgaaataagagatagttgtgcttaccgtcaaatcgcaaccttggcagtaa |
256 |
Q |
| |
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|||||||||||| |||||| |||||||| || ||||||||||||||| ||||||||||||||||| |||||||||| |||||||||||||||||| |||| |
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| T |
40068747 |
cttaaccatcaccggtcaccaatcaatatgaggagcaggaaataaggttatgaaataagagatagctgtgcttaccatcaaatcgcaaccttggccgtaa |
40068648 |
T |
|
| Q |
257 |
gagccacattttccgccatgagctgtcgtattttgattgaagtatcttataattttcaaccgctccagagagct |
330 |
Q |
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| T |
40068647 |
gagccacattttccgccatgagccatcgtattttgattgaagtattttatagttttcaaccgctccagagagct |
40068574 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 91; E-Value: 5e-44
Query Start/End: Original strand, 14 - 128
Target Start/End: Complemental strand, 29200132 - 29200018
Alignment:
| Q |
14 |
catcatgtccttaacttcgacagaaggattgaagcaaatcaatgtatcaggaccttgccattctcatttcaagtttaacctttcataatcacacaatcta |
113 |
Q |
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|||||||||||||| |||||||||| ||||||| |||||||||||||||||||||| ||||||||||||| |||||||||||||||||||||||||||| |
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| T |
29200132 |
catcatgtccttaagatcgacagaagcattgaagaaaatcaatgtatcaggaccttgtcattctcatttcaggtttaacctttcataatcacacaatcta |
29200033 |
T |
|
| Q |
114 |
gggaaattagtatgc |
128 |
Q |
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||||||||||||||| |
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|
| T |
29200032 |
gggaaattagtatgc |
29200018 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 68 - 128
Target Start/End: Complemental strand, 19768566 - 19768506
Alignment:
| Q |
68 |
ttgccattctcatttcaagtttaacctttcataatcacacaatctagggaaattagtatgc |
128 |
Q |
| |
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|||||||||||||||||||||||||||| |||||||| |||||||||||||| |||||||| |
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|
| T |
19768566 |
ttgccattctcatttcaagtttaaccttccataatcaaacaatctagggaaaatagtatgc |
19768506 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 33; Significance: 0.000000002; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 54 - 94
Target Start/End: Original strand, 8028212 - 8028252
Alignment:
| Q |
54 |
aatgtatcaggaccttgccattctcatttcaagtttaacct |
94 |
Q |
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||||||||||||||||||||||||| ||||| ||||||||| |
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| T |
8028212 |
aatgtatcaggaccttgccattctcctttcaggtttaacct |
8028252 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 45 - 124
Target Start/End: Complemental strand, 32663279 - 32663200
Alignment:
| Q |
45 |
aagcaaatcaatgtatcaggaccttgccattctcatttcaagtttaacctttcataatcacacaatctagggaaattagt |
124 |
Q |
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||||||| |||||||||||| | ||||||||||| |||| | |||||||| | | ||||||||||| ||||||| |||| |
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| T |
32663279 |
aagcaaactaatgtatcaggaacctgccattctcaattcaggcttaaccttcctttatcacacaatccagggaaaatagt |
32663200 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 285 - 326
Target Start/End: Complemental strand, 41099727 - 41099686
Alignment:
| Q |
285 |
tattttgattgaagtatcttataattttcaaccgctccagag |
326 |
Q |
| |
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||||||||||||||||||||||| ||||||||| ||| |||| |
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| T |
41099727 |
tattttgattgaagtatcttatagttttcaaccactctagag |
41099686 |
T |
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