View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19470_low_6 (Length: 445)
Name: NF19470_low_6
Description: NF19470
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19470_low_6 |
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Alignment Details
Target: chr8 (Bit Score: 202; Significance: 1e-110; HSPs: 7)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 202; E-Value: 1e-110
Query Start/End: Original strand, 18 - 310
Target Start/End: Complemental strand, 41805428 - 41805146
Alignment:
| Q |
18 |
cccttttaccctgcagctcctccaacaaatggnnnnnnnatctgtctgtaactgcctcctttccttgttcatcttattgatatattcttttgtaacctga |
117 |
Q |
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| T |
41805428 |
cccttttaccctgcagctcctccaacaaatggtttttt-atctgtctgtaactgcctcttttccttgttcatcttattgatatattcttttgtaacctga |
41805330 |
T |
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| Q |
118 |
agctcatgtgagatgtttgagatgcggttctcaatatttttgtggttgtcnnnnnnntttaagcttacagtatcgattccagatatcacactgttgaacc |
217 |
Q |
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| T |
41805329 |
agctcatgtgagatg---------cggttctcaatatttttgtggatgtcaaaaaaatttaagcttacagtatcgattccagatatcacactgttgaacc |
41805239 |
T |
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| Q |
218 |
actctttagtacttgtgatagtttcatgaaaagcttcattgtcagcggccattgtttcttctgcagtagaaatcctgatttgaagtgctctct |
310 |
Q |
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| T |
41805238 |
actctttagtacttgtgatagtttcatgaaaagcttcattgtcagcggccattgttgcttctgcagtagaaatcctgatttgaagtgctctct |
41805146 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 21 - 262
Target Start/End: Complemental strand, 41812256 - 41812017
Alignment:
| Q |
21 |
ttttaccctgcagctcctccaacaaatggnnnnnnnatctgtctgtaactgcctcctttccttgttcatcttattgatatattcttttgtaacctgaagc |
120 |
Q |
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| T |
41812256 |
ttttaccctgcaactcctccaataaatggttttt--atctgtctgtaactgccccttttccctactcatctcattgacagattcttttgcaacctgaagc |
41812159 |
T |
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| Q |
121 |
tcatgtgagatgtttgagatgcggttctcaatatttttgtggttgtcnnnnnnntttaagcttacagtatcgattccagatatcacactgttgaaccact |
220 |
Q |
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| T |
41812158 |
tcgtatgagatgtttgagatgcggttctcataattattgcagtcatccgaaaatttagagcttatagtatctatcccagatatcatactgttgacacact |
41812059 |
T |
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| Q |
221 |
ctttagtacttgtgatagtttcatgaaaagcttcattgtcag |
262 |
Q |
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| T |
41812058 |
ttttaatacttgtgatagtttcatgaaaagcttcattgtcag |
41812017 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 367 - 433
Target Start/End: Complemental strand, 41804841 - 41804775
Alignment:
| Q |
367 |
gttaacttgttcatattctttattcaaattctgatatgcatctgctcgttctgctaatgttctctga |
433 |
Q |
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| T |
41804841 |
gttaacttgttcatattctttattcaaattctgatatgcatctgctcgttctgctaatgttctctga |
41804775 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 304 - 366
Target Start/End: Complemental strand, 41805111 - 41805049
Alignment:
| Q |
304 |
gctctctcccttttcagttagcaattgttctttgtcccggatattttggtttgacaggcgaag |
366 |
Q |
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| T |
41805111 |
gctctctcccttttcacttagcaattgttctttgtcccggatattttggtttgacaagcgaag |
41805049 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 101 - 265
Target Start/End: Complemental strand, 41798962 - 41798798
Alignment:
| Q |
101 |
attcttttgtaacctgaagctcatgtgagatgtttgagatgcggttctcaatatttttgtggttgtcnnnnnnntttaagcttacagtatcgattccaga |
200 |
Q |
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| T |
41798962 |
attcttttgcaacctgaagctcatgggagatgtttgatatgtagttctcatgatttttgctttcgtcggaaaatttccggctcaaagtatctatcccaga |
41798863 |
T |
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| Q |
201 |
tatcacactgttgaaccactctttagtacttgtgatagtttcatgaaaagcttcattgtcagcgg |
265 |
Q |
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| T |
41798862 |
tatcacactgttgacacacactttaacacttgtgatagtttcatgaaaagcttcattgttagcgg |
41798798 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #6
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 304 - 366
Target Start/End: Complemental strand, 41798718 - 41798656
Alignment:
| Q |
304 |
gctctctcccttttcagttagcaattgttctttgtcccggatattttggtttgacaggcgaag |
366 |
Q |
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| T |
41798718 |
gctctcttccttttcacttagcaattgttctgtaacccggagcttttggtttgacaggcgaag |
41798656 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #7
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 373 - 433
Target Start/End: Complemental strand, 41798442 - 41798382
Alignment:
| Q |
373 |
ttgttcatattctttattcaaattctgatatgcatctgctcgttctgctaatgttctctga |
433 |
Q |
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| T |
41798442 |
ttgtttatattcttcattcaacttctgatatgcatcttcttgttcttccaatgttctctga |
41798382 |
T |
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