View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19470_low_7 (Length: 441)
Name: NF19470_low_7
Description: NF19470
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19470_low_7 |
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Alignment Details
Target: chr1 (Bit Score: 381; Significance: 0; HSPs: 6)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 381; E-Value: 0
Query Start/End: Original strand, 13 - 426
Target Start/End: Complemental strand, 7039309 - 7038896
Alignment:
| Q |
13 |
aatattgtatctcaagtatgtgggctagctatctatcaattgcaagttgaatttatttactatcggattcttaaccgaacagaggctgtttataggctat |
112 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
7039309 |
aatattgtatctcaagtatgtgggctagctatctatcaattgcaagttgaatttatttactatcggattcttaaccgaacagaggctgtttataggctat |
7039210 |
T |
|
| Q |
113 |
ttcatattacccttgttgaggggaaaattctttgaaatgtcaagccactcatattcaatgtttttcacacatgttttactgccctgcttcaaatgacatc |
212 |
Q |
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|||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
7039209 |
ttcatactacccttgttgaggggaaaattctttgaaatgtcaagccactcatattcaatgtttttcacacatgttttactgccctgcttcaaatgacatc |
7039110 |
T |
|
| Q |
213 |
tttctagtattattcttttccctaaagtgaatggattggtcactggtggctcttgatacacatgttagaagagaacaaattnnnnnnngttatgtttgat |
312 |
Q |
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| T |
7039109 |
tttctagtattattcttttccctaaagtgaatggattggtcactggtggctcttgatacacatgttagaagagaacaaattagaaaaagttatgtttgat |
7039010 |
T |
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| Q |
313 |
gtaggttaaaagtagtataacagaacatgacttaaaaagtggttcactttggtttaggttatttggttctatgtagatgtagaaatctcataagttggaa |
412 |
Q |
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| T |
7039009 |
gttggttaaaagtagtataacagaacatgacttaaaaagtggttcactttggtttaggttatttggttctatgtagatgtataaatctcataagttggaa |
7038910 |
T |
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| Q |
413 |
taataagaaaatat |
426 |
Q |
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| T |
7038909 |
taataagaaaatat |
7038896 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 163; E-Value: 7e-87
Query Start/End: Original strand, 239 - 426
Target Start/End: Complemental strand, 7880793 - 7880606
Alignment:
| Q |
239 |
gtgaatggattggtcactggtggctcttgatacacatgttagaagagaacaaattnnnnnnngttatgtttgatgtaggttaaaagtagtataacagaac |
338 |
Q |
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| T |
7880793 |
gtgaatggattggtcactggtggctcttgatacacatgttagaagagaacaaattagaaaaagttatgtttgatgttggttaaaagtagtataacagaac |
7880694 |
T |
|
| Q |
339 |
atgacttaaaaagtggttcactttggtttaggttatttggttctatgtagatgtagaaatctcataagttggaataataagaaaatat |
426 |
Q |
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| T |
7880693 |
atgacttaaaaagtggttcactttggtttaggttatttggttctatgtagatgtagaaatctcataagttggaataataagaaaatat |
7880606 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 77; E-Value: 1e-35
Query Start/End: Original strand, 166 - 242
Target Start/End: Complemental strand, 7880936 - 7880860
Alignment:
| Q |
166 |
ttcaatgtttttcacacatgttttactgccctgcttcaaatgacatctttctagtattattcttttccctaaagtga |
242 |
Q |
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| T |
7880936 |
ttcaatgtttttcacacatgttttactgccctgcttcaaatgacatctttctagtattattcttttccctaaagtga |
7880860 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 18 - 157
Target Start/End: Complemental strand, 7035740 - 7035608
Alignment:
| Q |
18 |
tgtatctcaagtatgtgggctagctatctatcaattgcaagttgaatttatttactatcggattcttaaccgaacagaggctgtttataggctatttcat |
117 |
Q |
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| T |
7035740 |
tgtatctcaagtatgtgggttagctatc----aattgcaa-ttgaatttctt-actattggattcttaaccgaa-agaggctgtttgaaggctatttcat |
7035648 |
T |
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| Q |
118 |
attacccttgttgaggggaaaattctttgaaatgtcaagc |
157 |
Q |
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|||| ||||||||||||||||||||||| ||||||||| |
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| T |
7035647 |
tctacctttgttgaggggaaaattctttgatatgtcaagc |
7035608 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #5
Raw Score: 59; E-Value: 8e-25
Query Start/End: Original strand, 50 - 120
Target Start/End: Complemental strand, 7881006 - 7880936
Alignment:
| Q |
50 |
aattgcaagttgaatttatttactatcggattcttaaccgaacagaggctgtttataggctatttcatatt |
120 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||| | ||||||||||| |||||||||| |
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| T |
7881006 |
aattgcaagttgaatttatttactatcggattcttaaccgaacagaagttgtttataggccatttcatatt |
7880936 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #6
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 18 - 155
Target Start/End: Complemental strand, 7896984 - 7896854
Alignment:
| Q |
18 |
tgtatctcaagtatgtgggctagctatctatcaattgcaagttgaatttatttactatcggattcttaaccgaacagaggctgtttataggctatttcat |
117 |
Q |
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| T |
7896984 |
tgtatctcaattatgtgggttagctatc----aattgcaa-ttgaatttctt-actattggattcttaaccgaa-agaggctgtttgaaggctatttcat |
7896892 |
T |
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| Q |
118 |
attacccttgttgaggggaaaattctttgaaatgtcaa |
155 |
Q |
| |
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|||| ||||||||||||||||||||||| ||||||| |
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| T |
7896891 |
tctacctttgttgaggggaaaattctttgatatgtcaa |
7896854 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 53; Significance: 3e-21; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 69 - 149
Target Start/End: Complemental strand, 29380160 - 29380081
Alignment:
| Q |
69 |
ttactatcggattcttaaccgaacagaggctgtttataggctatttcatattacccttgttgaggggaaaattctttgaaa |
149 |
Q |
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| T |
29380160 |
ttactattggatt-ttaacccaacagaggctgtttaaaggctatttcatactacccttgttgaagggaaaattctttgaaa |
29380081 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 172 - 242
Target Start/End: Complemental strand, 29379195 - 29379126
Alignment:
| Q |
172 |
gtttttcacacatgttttactgccctgcttcaaatgacatctttctagtattattcttttccctaaagtga |
242 |
Q |
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| T |
29379195 |
gtttttaacacatgttttagtgtcctgcttcaaatgaaattgttcta-tattattcttttacctaaagtga |
29379126 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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