View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF19471_high_1 (Length: 511)
Name: NF19471_high_1
Description: NF19471
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19471_high_1 |
 | |
|
Alignment Details
Target: chr8 (Bit Score: 212; Significance: 1e-116; HSPs: 4)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 212; E-Value: 1e-116
Query Start/End: Original strand, 16 - 247
Target Start/End: Complemental strand, 26586100 - 26585869
Alignment:
| Q |
16 |
caattgatacacgtaaagtttaaaggttgcaccaaataaaatacattgaataacatatggatgaatggttttgagtaagaatcaagatgaatttattttc |
115 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
26586100 |
caattgatacacgtaaagtttaaaggttgcaccaaataaaatacattgaataacatatgaatgaatggttttgagtaagaatcaagatgaatttattttc |
26586001 |
T |
|
| Q |
116 |
ataaatcaaaaagaggtatgccgaaacctcaagaatcatacatggagtataagtaaatcaacaaaggaatagatgaaaattttctcaagaaaataattgt |
215 |
Q |
| |
|
|||||||||||||||||||| ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
26586000 |
ataaatcaaaaagaggtatgttgaaaccttgagaatcatacatggagtataagtaaatcaacaaaggaatagatgaaaattttctcaagaaaataattgt |
26585901 |
T |
|
| Q |
216 |
tacatccttgagtacttatatagccagttaga |
247 |
Q |
| |
|
|||||||||||||||||||||||||||||||| |
|
|
| T |
26585900 |
tacatccttgagtacttatatagccagttaga |
26585869 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 192; E-Value: 1e-104
Query Start/End: Original strand, 290 - 505
Target Start/End: Complemental strand, 26585826 - 26585611
Alignment:
| Q |
290 |
atactttgctctattctttctcttaaattcccattgcaattctttctctataatcaaattcagtctcattcattccattataaccatgacggacttagac |
389 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| ||||||||||||||||||||||||||||||||||||| |
|
|
| T |
26585826 |
atactttgctctattctttctcttaaattcccattgcaattctttctctataatcaacttcaatctcattcattccattataaccatgacggacttagac |
26585727 |
T |
|
| Q |
390 |
ccagtaattaacattgttatgccatacataactgatcccatatcattgtcaccagctccaaaacttggtgattttgtgaggagagcaaaccaaacaaaag |
489 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||| ||||||||| |||||||||||||||||||||||||||||| |||||||||||||| |
|
|
| T |
26585726 |
ccagtaattaacattgttatgccatacataactgatcccatatcgttgtcaccaactccaaaacttggtgattttgtgaggagagaaaaccaaacaaaag |
26585627 |
T |
|
| Q |
490 |
tttgtttgacatggat |
505 |
Q |
| |
|
||||||| |||||||| |
|
|
| T |
26585626 |
tttgtttaacatggat |
26585611 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 118; E-Value: 6e-60
Query Start/End: Original strand, 28 - 211
Target Start/End: Original strand, 26925550 - 26925736
Alignment:
| Q |
28 |
gtaaagtttaaaggttgcaccaaataaaatacattgaataacatatggatgaatggttttgagtaagaatcaagatgaatttattttc---ataaatcaa |
124 |
Q |
| |
|
||||| || |||||||||||||||||||||||||||||||| |||||||||||||||||||||| | ||||||||| ||||| ||||| ||||||| | |
|
|
| T |
26925550 |
gtaaaattcaaaggttgcaccaaataaaatacattgaataagatatggatgaatggttttgagttataatcaagat-aatttcttttcttcataaatcta |
26925648 |
T |
|
| Q |
125 |
aa-agaggtatgccgaaacctcaagaatcatacatggagtataagtaaatcaacaaaggaatagatgaaaattttctcaagaaaataa |
211 |
Q |
| |
|
|| |||||||||| |||||||||||||||||||||||||||||||||||| ||||||||||| ||||||||||||||||||||||||| |
|
|
| T |
26925649 |
aacagaggtatgctgaaacctcaagaatcatacatggagtataagtaaatgaacaaaggaatcgatgaaaattttctcaagaaaataa |
26925736 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 453 - 501
Target Start/End: Complemental strand, 26585309 - 26585261
Alignment:
| Q |
453 |
cttggtgattttgtgaggagagcaaaccaaacaaaagtttgtttgacat |
501 |
Q |
| |
|
|||||||||||||||||||| |||||||||| |||||||||||||||| |
|
|
| T |
26585309 |
cttggtgattttgtgaggaggccaaaccaaaccaaagtttgtttgacat |
26585261 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 78; Significance: 4e-36; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 78; E-Value: 4e-36
Query Start/End: Original strand, 18 - 150
Target Start/End: Complemental strand, 19828937 - 19828804
Alignment:
| Q |
18 |
attgatacacgtaaagtttaaaggttgcaccaaataaaatacattgaataacatatggatgaatggttttgagtaagaatcaagatgaatttattttcat |
117 |
Q |
| |
|
|||||||||| |||| || |||||| ||||||||||||||||| |||||||||||||||||||||||||||||| |||||||||||||||| |||||| |
|
|
| T |
19828937 |
attgatacacataaaattccaaggtttcaccaaataaaatacatcgaataacatatggatgaatggttttgagtaggaatcaagatgaattttatttcat |
19828838 |
T |
|
| Q |
118 |
aaatcaaa-aagaggtatgccgaaacctcaagaa |
150 |
Q |
| |
|
|||||||| || ||||||| ||||||||||||| |
|
|
| T |
19828837 |
aaatcaaagcaggggtatgctgaaacctcaagaa |
19828804 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 435 - 483
Target Start/End: Complemental strand, 19828520 - 19828472
Alignment:
| Q |
435 |
ttgtcaccagctccaaaacttggtgattttgtgaggagagcaaaccaaa |
483 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||| ||||||||| |
|
|
| T |
19828520 |
ttgtcaccagctccaaaacttggtgattttgtgaggagaccaaaccaaa |
19828472 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 173 - 211
Target Start/End: Complemental strand, 19828810 - 19828772
Alignment:
| Q |
173 |
tcaacaaaggaatagatgaaaattttctcaagaaaataa |
211 |
Q |
| |
|
|||| |||||||| ||||||||||||||||||||||||| |
|
|
| T |
19828810 |
tcaagaaaggaatcgatgaaaattttctcaagaaaataa |
19828772 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 61; Significance: 6e-26; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 61; E-Value: 6e-26
Query Start/End: Original strand, 62 - 150
Target Start/End: Complemental strand, 8288830 - 8288742
Alignment:
| Q |
62 |
tgaataacatatggatgaatggttttgagtaagaatcaagatgaatttattttcataaatcaaaaagaggtatgccgaaacctcaagaa |
150 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||| | || |||||||| ||||||||||||||||| |||| |||||||| |
|
|
| T |
8288830 |
tgaataacatatggatgaatggttttgagtaagaatcaagataatctttttttcatagatcaaaaagaggtatgctgaaatctcaagaa |
8288742 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 59; E-Value: 9e-25
Query Start/End: Original strand, 435 - 505
Target Start/End: Complemental strand, 8288412 - 8288342
Alignment:
| Q |
435 |
ttgtcaccagctccaaaacttggtgattttgtgaggagagcaaaccaaacaaaagtttgtttgacatggat |
505 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||| ||| |||||| |||||||||||||||||||| |
|
|
| T |
8288412 |
ttgtcaccagctccaaaacttggtgattttgtgaggagaccaagccaaaccaaagtttgtttgacatggat |
8288342 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University