View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF19471_high_5 (Length: 293)

Name: NF19471_high_5
Description: NF19471
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF19471_high_5
NF19471_high_5
[»] chr1 (11 HSPs)
chr1 (19-278)||(23896139-23896401)
chr1 (25-278)||(24629213-24629466)
chr1 (25-281)||(24512852-24513108)
chr1 (96-281)||(24246496-24246685)
chr1 (96-278)||(24242859-24243041)
chr1 (101-281)||(24626771-24626961)
chr1 (96-281)||(25478732-25478917)
chr1 (169-281)||(25610965-25611077)
chr1 (172-281)||(24634804-24634912)
chr1 (120-281)||(24221995-24222156)
chr1 (227-260)||(45692910-45692943)
[»] chr4 (1 HSPs)
chr4 (25-281)||(11032706-11032962)
[»] chr7 (1 HSPs)
chr7 (228-281)||(1421168-1421221)
[»] scaffold0015 (2 HSPs)
scaffold0015 (221-281)||(32328-32388)
scaffold0015 (221-281)||(40380-40440)
[»] chr5 (5 HSPs)
chr5 (183-281)||(3181671-3181769)
chr5 (228-279)||(11081812-11081863)
chr5 (228-279)||(23766863-23766914)
chr5 (228-279)||(23816711-23816762)
chr5 (229-270)||(20292995-20293036)
[»] chr3 (17 HSPs)
chr3 (228-279)||(2696733-2696784)
chr3 (228-279)||(4142135-4142186)
chr3 (228-279)||(4157945-4157996)
chr3 (227-279)||(3754598-3754650)
chr3 (229-279)||(7324432-7324482)
chr3 (229-270)||(13498224-13498265)
chr3 (231-270)||(2459277-2459316)
chr3 (228-270)||(803228-803270)
chr3 (229-279)||(956381-956431)
chr3 (229-279)||(1437996-1438045)
chr3 (229-279)||(2456249-2456299)
chr3 (229-279)||(7334240-7334290)
chr3 (229-279)||(7942485-7942535)
chr3 (230-279)||(2631358-2631407)
chr3 (229-270)||(43991960-43992001)
chr3 (231-279)||(23230983-23231031)
chr3 (223-279)||(37753346-37753402)
[»] chr2 (2 HSPs)
chr2 (229-279)||(36577366-36577416)
chr2 (229-279)||(7156193-7156243)
[»] scaffold0044 (1 HSPs)
scaffold0044 (227-279)||(89141-89193)
[»] chr6 (1 HSPs)
chr6 (94-138)||(370936-370980)


Alignment Details
Target: chr1 (Bit Score: 229; Significance: 1e-126; HSPs: 11)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 229; E-Value: 1e-126
Query Start/End: Original strand, 19 - 278
Target Start/End: Complemental strand, 23896401 - 23896139
Alignment:
Q  19 cgacggggaataatcgtcaacggcacagttaattggttcgcttattctaatgttgtgtctcg---taatttctcgagtgtcattgtttcacttgatttag 115  Q
    |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||   |||||||||||||||||||||||||||||||||||    
T  23896401 cgaccgggaataatcgtcaacggcacagttaattggttcgcttattctaatgttgtgtctcgaggtaatttctcgagtgtcattgtttcacttgatttag 23896302  T
Q  116 aaaaagagtgttaccaagagattccacaacctaactatggaattatagataacttgaccttgggtatgatgagggattgcctgtgcgtatttgctaattc 215  Q
    |||||||||||||||||||||||| ||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||    
T  23896301 aaaaagagtgttaccaagagattcaacaacctaactatggaattatagataagttgaccttgggtatgatgagggattgcctgtgcgtatttgctaattc 23896202  T
Q  216 ttacccttttattgatgtttggcttatgaaggaatacggaaataaagagtcttgggttaaatt 278  Q
    |||| ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||    
T  23896201 ttactcttttattgatgtttggcttatgaaggaatatggaaataaagagtcttgggttaaatt 23896139  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 76; E-Value: 4e-35
Query Start/End: Original strand, 25 - 278
Target Start/End: Complemental strand, 24629466 - 24629213
Alignment:
Q  25 ggaataatcgtcaacggcacagttaattggttcgcttattctaatgttgtgtctcgtaatttctcgagtgtcattgtttcacttgatttagaaaaagagt 124  Q
    |||||||||||||  |||||||| |||||||| || ||||||| ||     ||| || || ||||| ||||||||||||| ||||| || |  |||||||    
T  24629466 ggaataatcgtcagtggcacagtaaattggtttgcatattctactgca---tctggtgatatctcgtgtgtcattgtttctcttgacttggggaaagagt 24629370  T
Q  125 gttaccaagagattccacaacctaactatg--gaattatagata-acttgaccttgggtatgatgagggattgcctgtgcgtatttgctaattcttaccc 221  Q
    |||||||||||||| || | ||||||||||  |||  |   ||  ||||||||||||||||||||||||||||||||||  ||||| |  ||||| ||      
T  24629369 gttaccaagagatttcagagcctaactatgatgaaaaacccatttacttgaccttgggtatgatgagggattgcctgtgtatattttcgtattctcactt 24629270  T
Q  222 ttttattgatgtttggcttatgaaggaatacggaaataaagagtcttgggttaaatt 278  Q
    |||||  |||||||||||||||||||||||||||||||||||||||||| |||||||    
T  24629269 ttttacagatgtttggcttatgaaggaatacggaaataaagagtcttggattaaatt 24629213  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 25 - 281
Target Start/End: Original strand, 24512852 - 24513108
Alignment:
Q  25 ggaataatcgtcaacggcacagttaattggttcgcttattctaatgttgtgtctcgtaatttctcgagtgtcattgtttcacttgatttagaaaaagagt 124  Q
    ||||||||||||| ||||||||| |||||||| || | |||||||||   | || ||||||| ||| ||| ||||||||| |||||||| |  |||||||    
T  24512852 ggaataatcgtcagcggcacagtaaattggtttgcatcttctaatgt---gcctggtaatttatcgcgtgccattgtttctcttgatttggggaaagagt 24512948  T
Q  125 gttaccaagagattccacaacctaact---atggaattatagataacttgaccttgggtatgatgagggattgcctgtgcgtatttgctaattcttaccc 221  Q
    |||||||||||||| || |||||||||   |||||||    | | | || |||||||||||||| || |||||  ||||| ||| | || ||||| || |    
T  24512949 gttaccaagagatttcagaacctaactatgatggaatgccggtttattttaccttgggtatgataagagattgtttgtgcatatgttctcattctaactc 24513048  T
Q  222 ttttattgatgtttggcttatgaaggaatacggaaataaagagtcttgggttaaattgat 281  Q
    ||| | |||||||||||||||||| ||||| |||| ||||||||| ||| ||||||||||    
T  24513049 tttcaatgatgtttggcttatgaaagaatatggaagtaaagagtcatggattaaattgat 24513108  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 96 - 281
Target Start/End: Complemental strand, 24246685 - 24246496
Alignment:
Q  96 cattgtttcacttgatttagaaaaagagtgttaccaagagattccacaacctaactatggaattataga----taacttgaccttgggtatgatgaggga 191  Q
    |||||||||  |||||||||  ||||||||||||||||||||| || | |||||| | |||||||  |     | ||| ||||||||||||||| |||||    
T  24246685 cattgtttcttttgatttagggaaagagtgttaccaagagatttcagagcctaaccacggaattaatgccggtttactcgaccttgggtatgataaggga 24246586  T
Q  192 ttgcctgtgcgtatttgctaattcttacccttttattgatgtttggcttatgaaggaatacggaaataaagagtcttgggttaaattgat 281  Q
    |||| ||||| ||||| || ||||  |   ||||| |||||||||||||||||| |||||||||||||||||||||||| | ||||||||    
T  24246585 ttgcttgtgcatattttctcattcagaatattttactgatgtttggcttatgaaagaatacggaaataaagagtcttggatgaaattgat 24246496  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 96 - 278
Target Start/End: Complemental strand, 24243041 - 24242859
Alignment:
Q  96 cattgtttcacttgatttagaaaaagagtgttaccaagagattccacaacctaactatggaattatagataacttgaccttgggtatgatgagggattgc 195  Q
    ||||||||| |||||||| |  ||||| | ||||||||| ||| |||| ||| | ||||||  | | | ||  |||||| ||||| ||||| |||||| |    
T  24243041 cattgtttctcttgatttggggaaagaatcttaccaagatatttcacagcctgattatggagattttgttaggttgaccatgggtgtgatgcgggatttc 24242942  T
Q  196 ctgtgcgtatttgctaattcttacccttttattgatgtttggcttatgaaggaatacggaaataaagagtcttgggttaaatt 278  Q
     ||||| ||||| || ||||| || |||||| |||||||||||||||||||  |||||||||||||||||||||| |||||||    
T  24242941 ttgtgcctattttcttattctgactcttttactgatgtttggcttatgaagatatacggaaataaagagtcttggattaaatt 24242859  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 54; E-Value: 5e-22
Query Start/End: Original strand, 101 - 281
Target Start/End: Complemental strand, 24626961 - 24626771
Alignment:
Q  101 tttcacttgatttaga-aaaagagtgttaccaagagattccacaacctaactatggaattatagataacttgaccttgggtatgatgagggattgcctgt 199  Q
    |||| |||||||| || ||||||||||||| |||| ||| |||||||||||||||||||    ||||| ||||| || |||||||||||||||||  |||    
T  24626961 tttctcttgatttggagaaaagagtgttacaaagaaatttcacaacctaactatggaatgcccgataaattgactttcggtatgatgagggattggttgt 24626862  T
Q  200 gcgtatttgctaattc-------ttacc--cttttattgatgtttggcttatgaaggaatacggaaataaagagtcttgggttaaattgat 281  Q
    |  ||||| || ||||       || |   ||||||| |||||||||||||||||||||||| ||| ||||||||||||||||||||||||    
T  24626861 gtatattttctcattcgcggtctttgcggtcttttatcgatgtttggcttatgaaggaatacagaattaaagagtcttgggttaaattgat 24626771  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 54; E-Value: 5e-22
Query Start/End: Original strand, 96 - 281
Target Start/End: Original strand, 25478732 - 25478917
Alignment:
Q  96 cattgtttcacttgatttagaaaaagagtgttaccaagagattccacaacctaactatggaattatagataacttgaccttgggtatgatgagggattgc 195  Q
    ||||||||| ||| |||| |  ||||||| ||| ||||||||| |||| ||| | ||||||||   |  ||||||||| |||||||| |||| ||||||     
T  25478732 cattgtttctcttcatttggggaaagagtcttatcaagagatttcacagcctgattatggaatgccaagtaacttgacgttgggtatcatgaaggattgt 25478831  T
Q  196 ctgtgcgtatttgctaattcttacccttttattgatgtttggcttatgaaggaatacggaaataaagagtcttgggttaaattgat 281  Q
     |||| |||||| ||   ||| || | || ||||||||||||||||||||||||||||| |||||||| |||||| ||||||||||    
T  25478832 ttgtgtgtattttcttgctctgactcattgattgatgtttggcttatgaaggaatacggtaataaagaatcttggattaaattgat 25478917  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 169 - 281
Target Start/End: Complemental strand, 25611077 - 25610965
Alignment:
Q  169 ttgaccttgggtatgatgagggattgcctgtgcgtatttgctaattcttacccttttattgatgtttggcttatgaaggaatacggaaataaagagtctt 268  Q
    |||| ||||||| ||||||| |||||  ||||| ||||| || ||||| |||| |||  |||||||||||| |||| |||||||||||||||||| ||||    
T  25611077 ttgaacttgggtgtgatgagagattgtttgtgcatattttcttattctcacccattttatgatgtttggctaatgacggaatacggaaataaagaatctt 25610978  T
Q  269 gggttaaattgat 281  Q
    |||||||||||||    
T  25610977 gggttaaattgat 25610965  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 172 - 281
Target Start/End: Complemental strand, 24634912 - 24634804
Alignment:
Q  172 accttgggtatgatgagggattgcctgtgcgtatttgctaattcttacccttttattgatgtttggcttatgaaggaatacggaaataaagagtcttggg 271  Q
    |||||||||||||| |||||||   ||||| ||| | || ||||| || ||| || ||||||||||||||||||||||||||||| ||||||||||| |     
T  24634912 accttgggtatgataagggatttt-tgtgcatatgttctcattctgactcttctaatgatgtttggcttatgaaggaatacggaattaaagagtcttaga 24634814  T
Q  272 ttaaattgat 281  Q
    || |||||||    
T  24634813 ttgaattgat 24634804  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 120 - 281
Target Start/End: Complemental strand, 24222156 - 24221995
Alignment:
Q  120 agagtgttaccaagagattccacaacctaactatggaattatagataacttgaccttgggtatgatgagggattgcctgtgcgtatttgctaattcttac 219  Q
    ||||| |||| |||||||| | |||||| | ||||||||  | | ||| |||||| || ||||| ||||||||||  ||||| || || || ||||  ||    
T  24222156 agagtcttacaaagagatttcgcaacctgattatggaatgtttgttaagttgaccatgtgtatgctgagggattgtttgtgcatagtttctcattccgac 24222057  T
Q  220 ccttttattgatgtttggcttatgaaggaatacggaaataaagagtcttgggttaaattgat 281  Q
     | |||| ||||||||||||| ||| ||| |||| |||| |||| ||||||||||| |||||    
T  24222056 tcatttaatgatgtttggcttttgatggattacgaaaatcaagaatcttgggttaagttgat 24221995  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 227 - 260
Target Start/End: Complemental strand, 45692943 - 45692910
Alignment:
Q  227 ttgatgtttggcttatgaaggaatacggaaataa 260  Q
    ||||||||||||||||||||||||||||| ||||    
T  45692943 ttgatgtttggcttatgaaggaatacggatataa 45692910  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 83; Significance: 2e-39; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 83; E-Value: 2e-39
Query Start/End: Original strand, 25 - 281
Target Start/End: Original strand, 11032706 - 11032962
Alignment:
Q  25 ggaataatcgtcaacggcacagttaattggttcgcttattctaatgttgtgtctcgtaatttctcgagtgtcattgtttcacttgatttagaaaaagagt 124  Q
    |||||||||||||  |||||||| |||||||| || ||||||| ||     ||| || |||||||| ||||||||||||| ||||| || |  |||||||    
T  11032706 ggaataatcgtcagtggcacagtaaattggtttgcatattctactgca---tctggtgatttctcgcgtgtcattgtttctcttgacttggggaaagagt 11032802  T
Q  125 gttaccaagagattccacaacctaactatg--gaattatagata-acttgaccttgggtatgatgagggattgcctgtgcgtatttgctaattcttaccc 221  Q
    |||||||||||||| || | ||||||||||  |||  |   ||  ||||||||||||||||||||||||||||||||||  ||||| |  ||||| || |    
T  11032803 gttaccaagagatttcagagcctaactatgatgaaaaacccatttacttgaccttgggtatgatgagggattgcctgtgtatattttcatattctcactc 11032902  T
Q  222 ttttattgatgtttggcttatgaaggaatacggaaataaagagtcttgggttaaattgat 281  Q
    |||||  ||||||||||| |||||||||||||||||||||||||||||| ||||||||||    
T  11032903 ttttaccgatgtttggctcatgaaggaatacggaaataaagagtcttggattaaattgat 11032962  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 50; Significance: 1e-19; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 228 - 281
Target Start/End: Complemental strand, 1421221 - 1421168
Alignment:
Q  228 tgatgtttggcttatgaaggaatacggaaataaagagtcttgggttaaattgat 281  Q
    ||||||||||||||||||||||||||||||||||||||||||| ||||||||||    
T  1421221 tgatgtttggcttatgaaggaatacggaaataaagagtcttggattaaattgat 1421168  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0015 (Bit Score: 49; Significance: 5e-19; HSPs: 2)
Name: scaffold0015
Description:

Target: scaffold0015; HSP #1
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 221 - 281
Target Start/End: Complemental strand, 32388 - 32328
Alignment:
Q  221 cttttattgatgtttggcttatgaaggaatacggaaataaagagtcttgggttaaattgat 281  Q
    ||||||||||||||||||||||||||||||| ||||||||||| |||||| ||||||||||    
T  32388 cttttattgatgtttggcttatgaaggaatatggaaataaagactcttggattaaattgat 32328  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0015; HSP #2
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 221 - 281
Target Start/End: Complemental strand, 40440 - 40380
Alignment:
Q  221 cttttattgatgtttggcttatgaaggaatacggaaataaagagtcttgggttaaattgat 281  Q
    |||||| |||||||||||||||||||||||| | ||||||||| |||||| ||||||||||    
T  40440 cttttactgatgtttggcttatgaaggaatatgaaaataaagactcttggattaaattgat 40380  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 5)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 183 - 281
Target Start/End: Original strand, 3181671 - 3181769
Alignment:
Q  183 gatgagggattgcctgtgcgtatttgctaattcttacccttttattgatgtttggcttatgaaggaatacggaaataaagagtcttgggttaaattgat 281  Q
    ||||||||| ||  |||| |||||| || ||||  || |||||  |||||||||||||||||||||||| |||||| ||||||||||| ||||||||||    
T  3181671 gatgagggaatgtttgtgtgtattttctcattccgactcttttgatgatgtttggcttatgaaggaatatggaaatgaagagtcttggattaaattgat 3181769  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 228 - 279
Target Start/End: Original strand, 11081812 - 11081863
Alignment:
Q  228 tgatgtttggcttatgaaggaatacggaaataaagagtcttgggttaaattg 279  Q
    |||||||||| |||||||||| || ||||||||||||||||||  |||||||    
T  11081812 tgatgtttgggttatgaaggagtatggaaataaagagtcttggactaaattg 11081863  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 228 - 279
Target Start/End: Complemental strand, 23766914 - 23766863
Alignment:
Q  228 tgatgtttggcttatgaaggaatacggaaataaagagtcttgggttaaattg 279  Q
    |||||||||| ||||||| ||||| ||||||||||||||||||  |||||||    
T  23766914 tgatgtttggattatgaaagaatatggaaataaagagtcttggactaaattg 23766863  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 228 - 279
Target Start/End: Complemental strand, 23816762 - 23816711
Alignment:
Q  228 tgatgtttggcttatgaaggaatacggaaataaagagtcttgggttaaattg 279  Q
    |||||||||| ||||||| ||||| ||||||||||||||||||  |||||||    
T  23816762 tgatgtttggattatgaaagaatatggaaataaagagtcttggactaaattg 23816711  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 229 - 270
Target Start/End: Original strand, 20292995 - 20293036
Alignment:
Q  229 gatgtttggcttatgaaggaatacggaaataaagagtcttgg 270  Q
    ||||||||| ||||||||||||| |||| |||||||||||||    
T  20292995 gatgtttggattatgaaggaatatggaattaaagagtcttgg 20293036  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 17)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 228 - 279
Target Start/End: Complemental strand, 2696784 - 2696733
Alignment:
Q  228 tgatgtttggcttatgaaggaatacggaaataaagagtcttgggttaaattg 279  Q
    |||||||||| ||||||||||||| |||||||||||||||||| ||||||||    
T  2696784 tgatgtttggattatgaaggaatatggaaataaagagtcttggattaaattg 2696733  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 228 - 279
Target Start/End: Complemental strand, 4142186 - 4142135
Alignment:
Q  228 tgatgtttggcttatgaaggaatacggaaataaagagtcttgggttaaattg 279  Q
    |||||||||||||||||||||||| ||||||||||||||||||  |||||||    
T  4142186 tgatgtttggcttatgaaggaatatggaaataaagagtcttggactaaattg 4142135  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 228 - 279
Target Start/End: Complemental strand, 4157996 - 4157945
Alignment:
Q  228 tgatgtttggcttatgaaggaatacggaaataaagagtcttgggttaaattg 279  Q
    |||||||||||||||||||||||| ||||||||||||||||||  |||||||    
T  4157996 tgatgtttggcttatgaaggaatatggaaataaagagtcttggactaaattg 4157945  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 227 - 279
Target Start/End: Original strand, 3754598 - 3754650
Alignment:
Q  227 ttgatgtttggcttatgaaggaatacggaaataaagagtcttgggttaaattg 279  Q
    ||||||||||| ||||||||||||| ||||||||||||||||||  |||||||    
T  3754598 ttgatgtttgggttatgaaggaatatggaaataaagagtcttggactaaattg 3754650  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 229 - 279
Target Start/End: Complemental strand, 7324482 - 7324432
Alignment:
Q  229 gatgtttggcttatgaaggaatacggaaataaagagtcttgggttaaattg 279  Q
    ||||||||| |||||||||| |||||||||||||||||||||  |||||||    
T  7324482 gatgtttggattatgaaggactacggaaataaagagtcttggactaaattg 7324432  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 229 - 270
Target Start/End: Original strand, 13498224 - 13498265
Alignment:
Q  229 gatgtttggcttatgaaggaatacggaaataaagagtcttgg 270  Q
    ||||||||| ||||||||||||| ||||||||||||||||||    
T  13498224 gatgtttggattatgaaggaatatggaaataaagagtcttgg 13498265  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 231 - 270
Target Start/End: Original strand, 2459277 - 2459316
Alignment:
Q  231 tgtttggcttatgaaggaatacggaaataaagagtcttgg 270  Q
    ||||||| ||||||||||||| ||||||||||||||||||    
T  2459277 tgtttggattatgaaggaatatggaaataaagagtcttgg 2459316  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 228 - 270
Target Start/End: Complemental strand, 803270 - 803228
Alignment:
Q  228 tgatgtttggcttatgaaggaatacggaaataaagagtcttgg 270  Q
    |||||||||| ||||||| ||||| ||||||||||||||||||    
T  803270 tgatgtttgggttatgaaagaatatggaaataaagagtcttgg 803228  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 229 - 279
Target Start/End: Original strand, 956381 - 956431
Alignment:
Q  229 gatgtttggcttatgaaggaatacggaaataaagagtcttgggttaaattg 279  Q
    ||||||||| ||||||||||||| ||||| ||||||||||||  |||||||    
T  956381 gatgtttggattatgaaggaatatggaaaaaaagagtcttggcataaattg 956431  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 229 - 279
Target Start/End: Original strand, 1437996 - 1438045
Alignment:
Q  229 gatgtttggcttatgaaggaatacggaaataaagagtcttgggttaaattg 279  Q
    ||||||||| ||||||||||||| ||||||||||| |||||| ||||||||    
T  1437996 gatgtttgg-ttatgaaggaatatggaaataaagactcttggattaaattg 1438045  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 229 - 279
Target Start/End: Original strand, 2456249 - 2456299
Alignment:
Q  229 gatgtttggcttatgaaggaatacggaaataaagagtcttgggttaaattg 279  Q
    ||||||||| ||||||||||||| ||||||||||| ||||||  |||||||    
T  2456249 gatgtttgggttatgaaggaatatggaaataaagactcttggactaaattg 2456299  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 229 - 279
Target Start/End: Complemental strand, 7334290 - 7334240
Alignment:
Q  229 gatgtttggcttatgaaggaatacggaaataaagagtcttgggttaaattg 279  Q
    ||||||||| | |||||||| |||||||||||||||||||||  |||||||    
T  7334290 gatgtttggatcatgaaggactacggaaataaagagtcttggactaaattg 7334240  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 229 - 279
Target Start/End: Original strand, 7942485 - 7942535
Alignment:
Q  229 gatgtttggcttatgaaggaatacggaaataaagagtcttgggttaaattg 279  Q
    ||||||||| |||||||||| || || ||||||||||||||| ||||||||    
T  7942485 gatgtttggattatgaaggagtatggtaataaagagtcttggattaaattg 7942535  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 230 - 279
Target Start/End: Original strand, 2631358 - 2631407
Alignment:
Q  230 atgtttggcttatgaaggaatacggaaataaagagtcttgggttaaattg 279  Q
    |||||||| ||||||||||||| |||||| |||||||||||  |||||||    
T  2631358 atgtttggattatgaaggaatatggaaatcaagagtcttggactaaattg 2631407  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 229 - 270
Target Start/End: Original strand, 43991960 - 43992001
Alignment:
Q  229 gatgtttggcttatgaaggaatacggaaataaagagtcttgg 270  Q
    ||||||||| ||||||||||||| ||||||| ||||||||||    
T  43991960 gatgtttggattatgaaggaatatggaaatatagagtcttgg 43992001  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 231 - 279
Target Start/End: Complemental strand, 23231031 - 23230983
Alignment:
Q  231 tgtttggcttatgaaggaatacggaaataaagagtcttgggttaaattg 279  Q
    ||||||||| ||||| ||||| |||||| ||||||||||| ||||||||    
T  23231031 tgtttggctaatgaaagaatatggaaatgaagagtcttggattaaattg 23230983  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 223 - 279
Target Start/End: Complemental strand, 37753402 - 37753346
Alignment:
Q  223 tttattgatgtttggcttatgaaggaatacggaaataaagagtcttgggttaaattg 279  Q
    ||||| ||||||||| ||||| ||||||| ||||| ||||||||||||  |||||||    
T  37753402 tttatggatgtttggattatggaggaatatggaaagaaagagtcttggactaaattg 37753346  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 39; Significance: 0.0000000000004; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 229 - 279
Target Start/End: Original strand, 36577366 - 36577416
Alignment:
Q  229 gatgtttggcttatgaaggaatacggaaataaagagtcttgggttaaattg 279  Q
    ||||||||| ||||||||||||| |||||||||||||||||| ||||||||    
T  36577366 gatgtttggattatgaaggaatatggaaataaagagtcttggattaaattg 36577416  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 229 - 279
Target Start/End: Complemental strand, 7156243 - 7156193
Alignment:
Q  229 gatgtttggcttatgaaggaatacggaaataaagagtcttgggttaaattg 279  Q
    |||||||||||||||||||| || |||||| |||| ||||||| |||||||    
T  7156243 gatgtttggcttatgaaggagtatggaaatgaagattcttgggctaaattg 7156193  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0044 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: scaffold0044
Description:

Target: scaffold0044; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 227 - 279
Target Start/End: Original strand, 89141 - 89193
Alignment:
Q  227 ttgatgtttggcttatgaaggaatacggaaataaagagtcttgggttaaattg 279  Q
    ||||| ||||| ||||||||||||| ||||||||||||||||||  |||||||    
T  89141 ttgatatttgggttatgaaggaatatggaaataaagagtcttggactaaattg 89193  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 94 - 138
Target Start/End: Complemental strand, 370980 - 370936
Alignment:
Q  94 gtcattgtttcacttgatttagaaaaagagtgttaccaagagatt 138  Q
    |||||| |||| ||||||||||||||||||| ||| |||||||||    
T  370980 gtcattctttctcttgatttagaaaaagagtattatcaagagatt 370936  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University