View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF19471_high_8 (Length: 254)
Name: NF19471_high_8
Description: NF19471
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19471_high_8 |
 | |
|
| [»] chr4 (1 HSPs) |
| |
|
| [»] chr7 (1 HSPs) |
| |
|
| [»] scaffold0384 (1 HSPs) |
| | |
|
Alignment Details
Target: chr4 (Bit Score: 229; Significance: 1e-126; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 229; E-Value: 1e-126
Query Start/End: Original strand, 17 - 254
Target Start/End: Original strand, 7621112 - 7621351
Alignment:
| Q |
17 |
aatattcaacagtgttat--tcttccttccaacatcatttatgttgaggagtgtatgttgccgtcagttgcctcttaattcccttttcactgcaaaattc |
114 |
Q |
| |
|
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
7621112 |
aatattcaacagtgttatattcttccttccaacatcatttatgttgaggagtgtatgttgccgtcagttgcctcttaattcccttttcactgcaaaattc |
7621211 |
T |
|
| Q |
115 |
attgaaagcatttgatgtaaactctcctcctgtgtcagttgtcaagcattgaatctgacactttgattctttatcaactaatgctttgaattttctaaac |
214 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
7621212 |
attgaaagcatttgatgtaaactctcctcctgtgtcagttgtcaagcattgaatctgacactttgattctttatcaactaatgctttgaattttctaaac |
7621311 |
T |
|
| Q |
215 |
atttcaaatgcattggatttctctatcaatggatatgtcc |
254 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
7621312 |
atttcaaatgcattggatttctctatcaatggatatgtcc |
7621351 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 197; Significance: 1e-107; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 197; E-Value: 1e-107
Query Start/End: Original strand, 18 - 254
Target Start/End: Complemental strand, 8922482 - 8922243
Alignment:
| Q |
18 |
atattcaacagtgttat--tcttccttcca-acatcatttatgttgaggagtgtatgttgccgtcagttgcctcttaattcccttttcactgcaaaattc |
114 |
Q |
| |
|
||||||||||||||||| ||||||||||| ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
8922482 |
atattcaacagtgttatattcttccttccagacatcatctatgttgaggagtgtatgttgccgtcagttgcctcttaattcccttttcactgcaaaattc |
8922383 |
T |
|
| Q |
115 |
attgaaagcatttgatgtaaactctcctcctgtgtcagttgtcaagcattgaatctgacactttgattctttatcaactaatgctttgaattttctaaac |
214 |
Q |
| |
|
||||||||||||||||||||||||||| | | | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
8922382 |
attgaaagcatttgatgtaaactctccccttctatcagttgtcaagcattgaatctgacactttgattctttatcaactaatgctttgaattttctaaac |
8922283 |
T |
|
| Q |
215 |
atttcaaatgcattggatttctctatcaatggatatgtcc |
254 |
Q |
| |
|
|||||||||||||| ||||||||||||||||||||||||| |
|
|
| T |
8922282 |
atttcaaatgcattagatttctctatcaatggatatgtcc |
8922243 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0384 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: scaffold0384
Description:
Target: scaffold0384; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 105 - 175
Target Start/End: Complemental strand, 2896 - 2826
Alignment:
| Q |
105 |
tgcaaaattcattgaaagcatttgatgtaaactctcctcctgtgtcagttgtcaagcattgaatctgacac |
175 |
Q |
| |
|
|||| ||||||||||| ||||| ||||||||||||||||| | |||||| |||| ||| |||||| |||| |
|
|
| T |
2896 |
tgcagaattcattgaatgcattagatgtaaactctcctcccctatcagttctcaaacatggaatcttacac |
2826 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University