View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19471_low_11 (Length: 234)
Name: NF19471_low_11
Description: NF19471
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19471_low_11 |
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Alignment Details
Target: chr8 (Bit Score: 217; Significance: 1e-119; HSPs: 4)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 217; E-Value: 1e-119
Query Start/End: Original strand, 1 - 217
Target Start/End: Original strand, 13202441 - 13202657
Alignment:
| Q |
1 |
ttccaatttgcttcaccaatttgacaaactcaacccttctttccctactcaaaggtacatatggtagcctaaaaacaggcttgataacaccaagttgagc |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
13202441 |
ttccaatttgcttcaccaatttgacaaactcaacccttctttccctactcaaaggtacatatggtagcctaaaaacaggcttgataacaccaagttgagc |
13202540 |
T |
|
| Q |
101 |
aagagcagtgttcaaaccaattgggataacctctaaagaaagccaatcaaacaaaggaataagctttgaattcaatgaaggattcattccttcattcatg |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
13202541 |
aagagcagtgttcaaaccaattgggataacctctaaagaaagccaatcaaacaaaggaataagctttgaattcaatgaaggattcattccttcattcatg |
13202640 |
T |
|
| Q |
201 |
agtttcaccattaaact |
217 |
Q |
| |
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||||||||||||||||| |
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| T |
13202641 |
agtttcaccattaaact |
13202657 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 85; E-Value: 1e-40
Query Start/End: Original strand, 53 - 185
Target Start/End: Original strand, 13180033 - 13180165
Alignment:
| Q |
53 |
aggtacatatggtagcctaaaaacaggcttgataacaccaagttgagcaagagcagtgttcaaaccaattgggataacctctaaagaaagccaatcaaac |
152 |
Q |
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|||||||||||| ||||||||||||||||||||||| ||||||||||||||||||||||||||| |||||||| | ||||| | |||||||||||||| |
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| T |
13180033 |
aggtacatatggcagcctaaaaacaggcttgataaccccaagttgagcaagagcagtgttcaaagcaattgggcttggctctataaaaagccaatcaaac |
13180132 |
T |
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| Q |
153 |
aaaggaataagctttgaattcaatgaaggattc |
185 |
Q |
| |
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|||| ||||||||||||||||||| ||||||| |
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| T |
13180133 |
aaagtcataagctttgaattcaatgtaggattc |
13180165 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 81; E-Value: 3e-38
Query Start/End: Original strand, 53 - 185
Target Start/End: Original strand, 13188295 - 13188427
Alignment:
| Q |
53 |
aggtacatatggtagcctaaaaacaggcttgataacaccaagttgagcaagagcagtgttcaaaccaattgggataacctctaaagaaagccaatcaaac |
152 |
Q |
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|||||||||||| ||||| ||||||||||||||||| ||||||||||||||||||||||||||| |||||||| | ||||| | |||||||||||||| |
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| T |
13188295 |
aggtacatatggaagcctgaaaacaggcttgataaccccaagttgagcaagagcagtgttcaaagcaattgggcttggctctataaaaagccaatcaaac |
13188394 |
T |
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| Q |
153 |
aaaggaataagctttgaattcaatgaaggattc |
185 |
Q |
| |
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|||| ||||||||||||||||||| ||||||| |
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| T |
13188395 |
aaagtcataagctttgaattcaatgtaggattc |
13188427 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 57 - 121
Target Start/End: Original strand, 13191423 - 13191487
Alignment:
| Q |
57 |
acatatggtagcctaaaaacaggcttgataacaccaagttgagcaagagcagtgttcaaaccaat |
121 |
Q |
| |
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|||| ||||||||| |||| ||||| ||||| ||||||||||||||||||||||||||| |||| |
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| T |
13191423 |
acatgtggtagcctgaaaattggcttaataaccccaagttgagcaagagcagtgttcaaagcaat |
13191487 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 37; Significance: 0.000000000005; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 53 - 121
Target Start/End: Complemental strand, 28177377 - 28177309
Alignment:
| Q |
53 |
aggtacatatggtagcctaaaaacaggcttgataacaccaagttgagcaagagcagtgttcaaaccaat |
121 |
Q |
| |
|
||||||| |||| ||||| ||||| ||| ||| ||| ||||||||||||||||| |||||||||||||| |
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| T |
28177377 |
aggtacaaatggcagcctgaaaactggcctgacaactccaagttgagcaagagccgtgttcaaaccaat |
28177309 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 33; Significance: 0.000000001; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 53 - 121
Target Start/End: Complemental strand, 39752826 - 39752758
Alignment:
| Q |
53 |
aggtacatatggtagcctaaaaacaggcttgataacaccaagttgagcaagagcagtgttcaaaccaat |
121 |
Q |
| |
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||||||| |||| ||||| ||||| ||| ||| ||| ||||| ||||||||||| |||||||||||||| |
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| T |
39752826 |
aggtacaaatggcagcctgaaaactggcctgacaactccaagctgagcaagagccgtgttcaaaccaat |
39752758 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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