View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF19471_low_2 (Length: 416)
Name: NF19471_low_2
Description: NF19471
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19471_low_2 |
 | |
|
| [»] scaffold0274 (2 HSPs) |
| | |
|
| [»] scaffold0648 (1 HSPs) |
| | |
|
| [»] scaffold0640 (1 HSPs) |
| | |
|
| [»] scaffold0271 (1 HSPs) |
| | |
|
Alignment Details
Target: chr4 (Bit Score: 349; Significance: 0; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 349; E-Value: 0
Query Start/End: Original strand, 14 - 410
Target Start/End: Original strand, 2708850 - 2709246
Alignment:
| Q |
14 |
ataaccacctgataaaatatgaagaaaatgaaatgaataaaacaaaatactctctagtttgatcaataaaacatgtcatacatatattgtgaataaaaca |
113 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
2708850 |
ataaccacctgataaaatatgaagaaaatgaaatgaataaaacaaaatactctctagtttgatcaataaaacatgtcatacatatattgtgaataaaaca |
2708949 |
T |
|
| Q |
114 |
aaatattgtatagtttgatcaataaactgtgaagtaggttcactaaccttaacttgtagaagctcgatttctataaaagtagtttaactttaccatcaaa |
213 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| ||||||||||| ||||||| |
|
|
| T |
2708950 |
aaatattgtatagtttgatcaataaactgtgaagtaggttcactaaccttaacttgtagaagctcgatttctatgaaagttgtttaactttatcatcaaa |
2709049 |
T |
|
| Q |
214 |
gttacatagatcttgtcacccactccatcaataaaccgatagtatgtgttcctccatttcttaataagaaacaaaggaccacaaatcccccaaaaaccta |
313 |
Q |
| |
|
|||||||||| ||||||||| ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
2709050 |
gttacatagagcttgtcacctactccatcaataaaccgatagtatgtgttcctccatttcctaataagaaacaaaggaccacaaatcccccaaaaaccta |
2709149 |
T |
|
| Q |
314 |
ctgcaaatccaactcccatacctagatacaatgattctcttatagattcatcgtctaaatttcctctagatggcattgcctttttatgatattcttc |
410 |
Q |
| |
|
||||||||||||||||||| ||||||||||||||||||||||||||||| |||||| ||||||||||||||||||||||||||||||| |||||| |
|
|
| T |
2709150 |
ctgcaaatccaactcccatgcctagatacaatgattctcttatagattcgtcgtcttcttttcctctagatggcattgcctttttatgattttcttc |
2709246 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 100; E-Value: 2e-49
Query Start/End: Original strand, 137 - 351
Target Start/End: Complemental strand, 15537134 - 15536919
Alignment:
| Q |
137 |
aaactgtgaagtaggttc-actaaccttaacttgtagaagctcgatttctataaaagtagtttaactttaccatcaaagttacatagatcttgtcaccca |
235 |
Q |
| |
|
||||||| |||||||||| ||| ||||||||| | || ||||| |||||| | ||| |||||||||||| |||||||| ||||||||||||||||| | |
|
|
| T |
15537134 |
aaactgttaagtaggttccactgaccttaactagcaggagctcaatttctgtgaaacatgtttaactttacgatcaaagtaacatagatcttgtcaccta |
15537035 |
T |
|
| Q |
236 |
ctccatcaataaaccgatagtatgtgttcctccatttcttaataagaaacaaaggaccacaaatcccccaaaaacctactgcaaatccaactcccatacc |
335 |
Q |
| |
|
|| |||| |||||||| |||||| | ||||||||| ||||||||||||||| ||||||||||||||| |||||||| ||||||||||||||||| || |
|
|
| T |
15537034 |
ctttatcagtaaaccgaaagtatgcatgcctccattttctaataagaaacaaagaaccacaaatcccccagaaacctaccgcaaatccaactcccatccc |
15536935 |
T |
|
| Q |
336 |
tagatacaatgattct |
351 |
Q |
| |
|
|||||||||||||||| |
|
|
| T |
15536934 |
tagatacaatgattct |
15536919 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 132; Significance: 2e-68; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 132; E-Value: 2e-68
Query Start/End: Original strand, 71 - 410
Target Start/End: Complemental strand, 8461232 - 8460893
Alignment:
| Q |
71 |
tttgatcaataaaacatgtcatacatatattgtgaataaaacaaaatattgtatagtttgatcaataaactgtgaagtaggttcactaaccttaacttgt |
170 |
Q |
| |
|
|||||||||| |||||||||||| ||| ||| || ||||||||||||||| ||| || || |||||||| | ||||||||||||||||||| || | |
|
|
| T |
8461232 |
tttgatcaatgaaacatgtcatagataaattatgcataaaacaaaatattctatggtgtgttcaataaaacttaaagtaggttcactaacctttgctagc |
8461133 |
T |
|
| Q |
171 |
agaagctcgatttctataaaagtagtttaactttaccatcaaagttacatagatcttgtcacccactccatcaataaaccgatagtatgtgttcctccat |
270 |
Q |
| |
|
|| ||||| |||||| ||| ||||||||||||||||| || |||||| ||||||||||| |||||||||||| |||||||||| | ||||||| |
|
|
| T |
8461132 |
aggagctcaatttctgcgaaatctaattaactttaccatcaaaattccatagagcttgtcacccattccatcaataaatcgatagtatgcatgcctccat |
8461033 |
T |
|
| Q |
271 |
ttcttaataagaaacaaaggaccacaaatcccccaaaaacctactgcaaatccaactcccatacctagatacaatgattctcttatagattcatcgtcta |
370 |
Q |
| |
|
||| ||||||||||||||| ||||||||||||||||||||| |||||||||||||||||||| || ||||||||||||||||||||||| ||||| ||| |
|
|
| T |
8461032 |
ttcctaataagaaacaaagaaccacaaatcccccaaaaacccactgcaaatccaactcccatgccaagatacaatgattctcttatagagtcatcatctt |
8460933 |
T |
|
| Q |
371 |
aatttcctctagatggcattgcctttttatgatattcttc |
410 |
Q |
| |
|
||| || |||| |||||||| ||||| ||| |||||| |
|
|
| T |
8460932 |
cattctctgtagacggcattgcagttttaggattttcttc |
8460893 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 112; Significance: 2e-56; HSPs: 30)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 112; E-Value: 2e-56
Query Start/End: Original strand, 72 - 351
Target Start/End: Complemental strand, 16678872 - 16678593
Alignment:
| Q |
72 |
ttgatcaataaaacatgtcatacatatattgtgaataaaacaaaatattgtatagtttgatcaataaactgtgaagtaggttcactaaccttaacttgta |
171 |
Q |
| |
|
||||||||||||| |||||||||||| | | ||||| |||||| || | ||||||||||| |||||| | || ||||| |||||||||| ||| || |
|
|
| T |
16678872 |
ttgatcaataaaagatgtcatacataaactacgaatacaacaaattactctatagtttgattaataaaacttaaaataggtccactaaccttcactatta |
16678773 |
T |
|
| Q |
172 |
gaagctcgatttctataaaagtagtttaactttaccatcaaagttacatagatcttgtcacccactccatcaataaaccgatagtatgtgttcctccatt |
271 |
Q |
| |
|
| | ||| | |||| | ||||| |||||||||||||||||||||||||| | |||||| ||||||||||||||||| |||||||||||| |||||||| |
|
|
| T |
16678772 |
ggaactcaacttctgtgaaagttatttaactttaccatcaaagttacatacagcttgtcgcccactccatcaataaattgatagtatgtgtgcctccatt |
16678673 |
T |
|
| Q |
272 |
tcttaataagaaacaaaggaccacaaatcccccaaaaacctactgcaaatccaactcccatacctagatacaatgattct |
351 |
Q |
| |
|
|| ||||||||||||||| ||||||||| ||||| |||||||| ||||| |||||||||| || ||||||||||||||| |
|
|
| T |
16678672 |
tcctaataagaaacaaagaaccacaaataccccagaaacctaccgcaaaaccaactcccaagcccagatacaatgattct |
16678593 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 106; E-Value: 6e-53
Query Start/End: Original strand, 137 - 369
Target Start/End: Original strand, 14894789 - 14895022
Alignment:
| Q |
137 |
aaactgtgaagtaggtt-cactaaccttaacttgtagaagctcgatttctataaaagtagtttaactttaccatcaaagttacatagatcttgtcaccca |
235 |
Q |
| |
|
||||||||||||||||| |||||||||||||| | | ||||| |||| | ||||| |||||||||| |||||||| ||||||| ||||||||| | |
|
|
| T |
14894789 |
aaactgtgaagtaggttacactaaccttaactagccggagctcaattttttccaaagttgtttaactttgggatcaaagtaacatagagcttgtcaccta |
14894888 |
T |
|
| Q |
236 |
ctccatcaataaaccgatagtatgtgttcctccatttcttaataagaaacaaaggaccacaaatcccccaaaaacctactgcaaatccaactcccatacc |
335 |
Q |
| |
|
||||||||||||||||| |||||| | ||||||||| ||||||||||||||| |||| |||||||||||||||||||||||||||||| |||||| || |
|
|
| T |
14894889 |
ctccatcaataaaccgaaagtatgcatgcctccattttctaataagaaacaaagaaccagaaatcccccaaaaacctactgcaaatccaattcccatgcc |
14894988 |
T |
|
| Q |
336 |
tagatacaatgattctcttatagattcatcgtct |
369 |
Q |
| |
|
||||||| ||||||||||||||| || |||||| |
|
|
| T |
14894989 |
aagatacattgattctcttatagagtcctcgtct |
14895022 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 106; E-Value: 6e-53
Query Start/End: Original strand, 122 - 410
Target Start/End: Complemental strand, 19382509 - 19382220
Alignment:
| Q |
122 |
tatagtttgatcaataaactgtgaagtaggtt-cactaaccttaacttgtagaagctcgatttctataaaagtagtttaactttaccatcaaagttacat |
220 |
Q |
| |
|
||||||||||| |||||| ||||||||||| |||||||||||||| | || ||||| |||||| |||| |||||||||||| ||||| | |||| |
|
|
| T |
19382509 |
tatagtttgattaataaaacttgaagtaggtttcactaaccttaactggcagcagctcaatttctgcgaaagctatttaactttaccgtcaaaataacat |
19382410 |
T |
|
| Q |
221 |
agatcttgtcacccactccatcaataaaccgatagtatgtgttcctccatttcttaataagaaacaaaggaccacaaatcccccaaaaacctactgcaaa |
320 |
Q |
| |
|
||| ||||||||| ||||||| ||||||||| |||||| | |||||||||| |||||||||| |||| ||||||||||||||||||||||||| |||| |
|
|
| T |
19382409 |
agagcttgtcacctactccatagataaaccgaaagtatgcatgcctccatttcctaataagaaataaagaaccacaaatcccccaaaaacctactccaaa |
19382310 |
T |
|
| Q |
321 |
tccaactcccatacctagatacaatgattctcttatagattcatcgtctaaatttcctctagatggcattgcctttttatgatattcttc |
410 |
Q |
| |
|
|||||||||||| ||||||||||| || ||| ||||||||||||| ||| ||| || ||||||||| ||| ||||| ||| |||||| |
|
|
| T |
19382309 |
tccaactcccatgcctagatacaacgactctattatagattcatcatcttcattctctgtagatggcagtgcagttttaggattttcttc |
19382220 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 101; E-Value: 6e-50
Query Start/End: Original strand, 114 - 365
Target Start/End: Complemental strand, 19465976 - 19465724
Alignment:
| Q |
114 |
aaatattgtatagtttgatcaataaactgtgaagtaggtt-cactaaccttaacttgtagaagctcgatttctataaaagtagtttaactttaccatcaa |
212 |
Q |
| |
|
||||||| |||||||||| ||||| ||||||||||| |||||||||||||| |||| ||||| |||||| |||| |||||||||||| |||| |
|
|
| T |
19465976 |
aaatattctatagtttgactgataaaacttgaagtaggtttcactaaccttaactggtaggagctcaatttctgcgaaagctatttaactttaccgtcaa |
19465877 |
T |
|
| Q |
213 |
agttacatagatcttgtcacccactccatcaataaaccgatagtatgtgttcctccatttcttaataagaaacaaaggaccacaaatcccccaaaaacct |
312 |
Q |
| |
|
||| ||||||| ||||||||| | ||||| ||||||||| |||||| | |||||||||| ||||||||||||||| ||||||||||||||| |||||| |
|
|
| T |
19465876 |
agtaacatagagcttgtcacctattccatatataaaccgaaagtatgcatgcctccatttcctaataagaaacaaagaaccacaaatcccccagaaacct |
19465777 |
T |
|
| Q |
313 |
actgcaaatccaactcccatacctagatacaatgattctcttatagattcatc |
365 |
Q |
| |
|
||||||||||||||||| | | |||||||||||||||| |||| |||||||| |
|
|
| T |
19465776 |
gctgcaaatccaactcccgtccttagatacaatgattcttttatcgattcatc |
19465724 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 99; E-Value: 1e-48
Query Start/End: Original strand, 189 - 367
Target Start/End: Complemental strand, 25464601 - 25464423
Alignment:
| Q |
189 |
aaagtagtttaactttaccatcaaagttacatagatcttgtcacccactccatcaataaaccgatagtatgtgttcctccatttcttaataagaaacaaa |
288 |
Q |
| |
|
||||| |||||||||||| |||||||| ||||||| ||||||| |||||||| |||||||||| |||||| | |||||||||| |||||| ||||||| |
|
|
| T |
25464601 |
aaagtggtttaactttacgatcaaagtaacatagagtttgtcactcactccattaataaaccgaaagtatgcatgcctccatttcctaataaaaaacaaa |
25464502 |
T |
|
| Q |
289 |
ggaccacaaatcccccaaaaacctactgcaaatccaactcccatacctagatacaatgattctcttatagattcatcgt |
367 |
Q |
| |
|
| ||||||||||||||| ||||||| ||||||||||||||||| |||||||||||||||||| ||||||| ||||||| |
|
|
| T |
25464501 |
gaaccacaaatcccccagaaacctattgcaaatccaactcccaagcctagatacaatgattcttttatagagtcatcgt |
25464423 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #6
Raw Score: 98; E-Value: 4e-48
Query Start/End: Original strand, 196 - 365
Target Start/End: Original strand, 17725996 - 17726165
Alignment:
| Q |
196 |
tttaactttaccatcaaagttacatagatcttgtcacccactccatcaataaaccgatagtatgtgttcctccatttcttaataagaaacaaaggaccac |
295 |
Q |
| |
|
||||||||||| || ||||| ||||||| ||||||||| |||||||||||||||| | |||||| | ||||||||| ||||||||||||||| ||||| |
|
|
| T |
17725996 |
tttaactttacaattaaagtaacatagagcttgtcacctactccatcaataaaccaaaagtatgcatgcctccattttctaataagaaacaaagaaccac |
17726095 |
T |
|
| Q |
296 |
aaatcccccaaaaacctactgcaaatccaactcccatacctagatacaatgattctcttatagattcatc |
365 |
Q |
| |
|
|||||||||| |||||||||||||||||||||||||| |||||||||||||||||| | ||||| ||||| |
|
|
| T |
17726096 |
aaatcccccagaaacctactgcaaatccaactcccatccctagatacaatgattctttgatagagtcatc |
17726165 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #7
Raw Score: 98; E-Value: 4e-48
Query Start/End: Original strand, 196 - 365
Target Start/End: Original strand, 19027225 - 19027394
Alignment:
| Q |
196 |
tttaactttaccatcaaagttacatagatcttgtcacccactccatcaataaaccgatagtatgtgttcctccatttcttaataagaaacaaaggaccac |
295 |
Q |
| |
|
||||||||||| || ||||| ||||||| ||||||||| |||||||||||||||| | |||||| | ||||||||| ||||||||||||||| ||||| |
|
|
| T |
19027225 |
tttaactttacaattaaagtaacatagagcttgtcacctactccatcaataaaccaaaagtatgcatgcctccattttctaataagaaacaaagaaccac |
19027324 |
T |
|
| Q |
296 |
aaatcccccaaaaacctactgcaaatccaactcccatacctagatacaatgattctcttatagattcatc |
365 |
Q |
| |
|
|||||||||| |||||||||||||||||||||||||| |||||||||||||||||| | ||||| ||||| |
|
|
| T |
19027325 |
aaatcccccagaaacctactgcaaatccaactcccatccctagatacaatgattctttgatagagtcatc |
19027394 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #8
Raw Score: 97; E-Value: 2e-47
Query Start/End: Original strand, 145 - 365
Target Start/End: Complemental strand, 17951415 - 17951195
Alignment:
| Q |
145 |
aagtaggttcactaaccttaacttgtagaagctcgatttctataaaagtagtttaactttaccatcaaagttacatagatcttgtcacccactccatcaa |
244 |
Q |
| |
|
||||||||||||||||||| || | |||||||| | |||| ||||| |||||||||||| ||||||||||||||| | ||| ||||||||||| | |
|
|
| T |
17951415 |
aagtaggttcactaaccttttctagcagaagctcaacttctgcaaaagctatttaactttaccttcaaagttacatagagcctgttacccactccatata |
17951316 |
T |
|
| Q |
245 |
taaaccgatagtatgtgttcctccatttcttaataagaaacaaaggaccacaaatcccccaaaaacctactgcaaatccaactcccatacctagatacaa |
344 |
Q |
| |
|
|||||||| |||||| | ||||||||| |||||||||||||| ||||||||||||||| ||||||||||||||||| ||||||||||| || ||||| |
|
|
| T |
17951315 |
taaaccgaaagtatgcatgcctccattttcgaataagaaacaaagaaccacaaatcccccagaaacctactgcaaatcccactcccataccaaggtacaa |
17951216 |
T |
|
| Q |
345 |
tgattctcttatagattcatc |
365 |
Q |
| |
|
||||||| ||| ||||||||| |
|
|
| T |
17951215 |
tgattcttttagagattcatc |
17951195 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #9
Raw Score: 97; E-Value: 2e-47
Query Start/End: Original strand, 195 - 363
Target Start/End: Complemental strand, 19377161 - 19376993
Alignment:
| Q |
195 |
gtttaactttaccatcaaagttacatagatcttgtcacccactccatcaataaaccgatagtatgtgttcctccatttcttaataagaaacaaaggacca |
294 |
Q |
| |
|
|||||||||||| |||||||| ||||||| |||||||| |||| || ||||||| || |||||| | |||||||||| ||||||||||||||| ||| |
|
|
| T |
19377161 |
gtttaactttacgatcaaagtaacatagagtttgtcacctactctattaataaactgaaagtatgcatgcctccatttcctaataagaaacaaagaaccg |
19377062 |
T |
|
| Q |
295 |
caaatcccccaaaaacctactgcaaatccaactcccatacctagatacaatgattctcttatagattca |
363 |
Q |
| |
|
||||||||||| |||||||||||||||||||||||||| ||||||||||||||||||||||| |||||| |
|
|
| T |
19377061 |
caaatcccccagaaacctactgcaaatccaactcccatgcctagatacaatgattctcttatggattca |
19376993 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #10
Raw Score: 96; E-Value: 6e-47
Query Start/End: Original strand, 196 - 359
Target Start/End: Original strand, 18872337 - 18872500
Alignment:
| Q |
196 |
tttaactttaccatcaaagttacatagatcttgtcacccactccatcaataaaccgatagtatgtgttcctccatttcttaataagaaacaaaggaccac |
295 |
Q |
| |
|
|||||||||| ||||||||| ||||||| ||||||||| ||||||| ||||||| | |||||| | |||||||||| ||||||||||||||| ||||| |
|
|
| T |
18872337 |
tttaactttatcatcaaagtaacatagagcttgtcacctactccatatataaaccaaaagtatgcatgcctccatttcctaataagaaacaaagaaccac |
18872436 |
T |
|
| Q |
296 |
aaatcccccaaaaacctactgcaaatccaactcccatacctagatacaatgattctcttataga |
359 |
Q |
| |
|
|||||||||| |||||||||||||||||||||||||| || ||||||| ||||||||||||||| |
|
|
| T |
18872437 |
aaatcccccagaaacctactgcaaatccaactcccatgccaagatacattgattctcttataga |
18872500 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #11
Raw Score: 95; E-Value: 2e-46
Query Start/End: Original strand, 105 - 410
Target Start/End: Complemental strand, 19355350 - 19355042
Alignment:
| Q |
105 |
aataaaacaaaatattgtatagtttgatcaataaa-ctgtgaagtaggttc-actaaccttaac--ttgtagaagctcgatttctataaaagtagtttaa |
200 |
Q |
| |
|
||||||||||| || | |||||| |||||||||| || |||||||||||| |||||||||||| | | || ||||| |||||| | ||| |||||| |
|
|
| T |
19355350 |
aataaaacaaa-tactttatagtcagatcaataaaactatgaagtaggttccactaaccttaacaatagcaggagctcaatttcttttaaacccgtttaa |
19355252 |
T |
|
| Q |
201 |
ctttaccatcaaagttacatagatcttgtcacccactccatcaataaaccgatagtatgtgttcctccatttcttaataagaaacaaaggaccacaaatc |
300 |
Q |
| |
|
|||||| |||||||| |||||||||||||||| ||||| ||||| ||||||| |||||| | ||||||||| |||| |||||||||| || |||||| |
|
|
| T |
19355251 |
ctttacgatcaaagtaacatagatcttgtcacgcactctatcaacaaaccgaaagtatgcatgcctccattttctaattagaaacaaagaacggcaaatc |
19355152 |
T |
|
| Q |
301 |
ccccaaaaacctactgcaaatccaactcccatacctagatacaatgattctcttatagattcatcgtctaaatttcctctagatggcattgcctttttat |
400 |
Q |
| |
|
||||| |||||||||||||||||||||||||| |||||||||||||||||| | ||||| || || ||| |||| | ||||||||||||| ||||| |
|
|
| T |
19355151 |
ccccagaaacctactgcaaatccaactcccatgcctagatacaatgattctttgatagagtcgtcatcttcattttttgtagatggcattgcagttttag |
19355052 |
T |
|
| Q |
401 |
gatattcttc |
410 |
Q |
| |
|
||| |||||| |
|
|
| T |
19355051 |
gattttcttc |
19355042 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #12
Raw Score: 92; E-Value: 1e-44
Query Start/End: Original strand, 196 - 359
Target Start/End: Complemental strand, 19394690 - 19394527
Alignment:
| Q |
196 |
tttaactttaccatcaaagttacatagatcttgtcacccactccatcaataaaccgatagtatgtgttcctccatttcttaataagaaacaaaggaccac |
295 |
Q |
| |
|
|||||||||||| ||||| | ||||||| ||||||||| ||||||| |||| |||| || ||| | |||||||||| ||||||||||||||| ||||| |
|
|
| T |
19394690 |
tttaactttaccgtcaaaataacatagagcttgtcacctactccatatataacccgaaagcatgcatgcctccatttcctaataagaaacaaagaaccac |
19394591 |
T |
|
| Q |
296 |
aaatcccccaaaaacctactgcaaatccaactcccatacctagatacaatgattctcttataga |
359 |
Q |
| |
|
|||||||||| |||||||||||||||||||||||||| |||||||||||||||||| ||||||| |
|
|
| T |
19394590 |
aaatcccccagaaacctactgcaaatccaactcccatccctagatacaatgattcttttataga |
19394527 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #13
Raw Score: 91; E-Value: 6e-44
Query Start/End: Original strand, 137 - 355
Target Start/End: Complemental strand, 19335615 - 19335394
Alignment:
| Q |
137 |
aaactgtgaagtaggttc-actaaccttaactt--gtagaagctcgatttctataaaagtagtttaactttaccatcaaagttacatagatcttgtcacc |
233 |
Q |
| |
|
||||| |||||||||||| ||||||||||||| | || ||||| |||||| | ||| ||| |||||||| |||||||| ||||||||||||||||| |
|
|
| T |
19335615 |
aaactatgaagtaggttccactaaccttaactatagcaggagctcaatttcttttaaacatgttcaactttacgatcaaagtaacatagatcttgtcacc |
19335516 |
T |
|
| Q |
234 |
cactccatcaataaaccgatagtatgtgttcctccatttcttaataagaaacaaaggaccacaaatcccccaaaaacctactgcaaatccaactcccata |
333 |
Q |
| |
|
||||| || || ||||||| |||| | | ||||||||| ||||||||||||||| ||||||||||||||| |||||| ||||||||||||||| ||| |
|
|
| T |
19335515 |
cactctataaacaaaccgaaagtaagcatgcctccattttctaataagaaacaaagaaccacaaatcccccagaaacctgctgcaaatccaactctcatc |
19335416 |
T |
|
| Q |
334 |
cctagatacaatgattctctta |
355 |
Q |
| |
|
|||||||||||||||||||||| |
|
|
| T |
19335415 |
cctagatacaatgattctctta |
19335394 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #14
Raw Score: 91; E-Value: 6e-44
Query Start/End: Original strand, 195 - 365
Target Start/End: Complemental strand, 19426232 - 19426062
Alignment:
| Q |
195 |
gtttaactttaccatcaaagttacatagatcttgtcacccactccatcaataaaccgatagtatgtgttcctccatttcttaataagaaacaaaggacca |
294 |
Q |
| |
|
|||||||||||| |||||||| ||||||||||| |||| ||||| ||||| ||||||| |||||| | | ||||||| ||||||| ||||||| |||| |
|
|
| T |
19426232 |
gtttaactttacgatcaaagtaacatagatcttatcacgcactctatcaacaaaccgaaagtatgcatgcttccattttctaataaggaacaaagaacca |
19426133 |
T |
|
| Q |
295 |
caaatcccccaaaaacctactgcaaatccaactcccatacctagatacaatgattctcttatagattcatc |
365 |
Q |
| |
|
||||||||||| |||||||||||||||||||||||||| |||||||||||||||||| | ||||| ||||| |
|
|
| T |
19426132 |
caaatcccccagaaacctactgcaaatccaactcccatccctagatacaatgattctttgatagagtcatc |
19426062 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #15
Raw Score: 90; E-Value: 2e-43
Query Start/End: Original strand, 148 - 365
Target Start/End: Complemental strand, 18110019 - 18109802
Alignment:
| Q |
148 |
taggttcactaaccttaacttgtagaagctcgatttctataaaagtagtttaactttaccatcaaagttacatagatcttgtcacccactccatcaataa |
247 |
Q |
| |
|
|||||||||||||||| ||| | |||||||| | ||| ||||| || |||||||||||||| |||||||||| | ||| ||||||||||| |||| |
|
|
| T |
18110019 |
taggttcactaacctttactagcagaagctcaacttcagcaaaagctattcaactttaccatcaatgttacatagagcctgttacccactccatatataa |
18109920 |
T |
|
| Q |
248 |
accgatagtatgtgttcctccatttcttaataagaaacaaaggaccacaaatcccccaaaaacctactgcaaatccaactcccatacctagatacaatga |
347 |
Q |
| |
|
| ||| |||||| | |||||||||| | |||| |||||||| ||||||||||||||| ||||||||||||||||| ||||||||||| || |||||||| |
|
|
| T |
18109919 |
aacgaaagtatgcatgcctccatttcctgataacaaacaaagaaccacaaatcccccagaaacctactgcaaatcccactcccataccaaggtacaatga |
18109820 |
T |
|
| Q |
348 |
ttctcttatagattcatc |
365 |
Q |
| |
|
|||| ||||||||||||| |
|
|
| T |
18109819 |
ttcttttatagattcatc |
18109802 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #16
Raw Score: 90; E-Value: 2e-43
Query Start/End: Original strand, 196 - 365
Target Start/End: Complemental strand, 18117497 - 18117328
Alignment:
| Q |
196 |
tttaactttaccatcaaagttacatagatcttgtcacccactccatcaataaaccgatagtatgtgttcctccatttcttaataagaaacaaaggaccac |
295 |
Q |
| |
|
||||||||||| |||||||| ||||||| | ||||||||||| ||||| |||||| |||| | | |||||||||| |||||||||||| || ||||| |
|
|
| T |
18117497 |
tttaactttacgatcaaagtaacatagagatagtcacccactctatcaactaaccgaaagtacgcatgcctccatttcctaataagaaacatagaaccac |
18117398 |
T |
|
| Q |
296 |
aaatcccccaaaaacctactgcaaatccaactcccatacctagatacaatgattctcttatagattcatc |
365 |
Q |
| |
|
|||||||||| ||||||||||||||||| |||||||| |||||||||||||| ||||||||||||||||| |
|
|
| T |
18117397 |
aaatcccccagaaacctactgcaaatcccactcccatgcctagatacaatgactctcttatagattcatc |
18117328 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #17
Raw Score: 90; E-Value: 2e-43
Query Start/End: Original strand, 196 - 365
Target Start/End: Complemental strand, 18166697 - 18166528
Alignment:
| Q |
196 |
tttaactttaccatcaaagttacatagatcttgtcacccactccatcaataaaccgatagtatgtgttcctccatttcttaataagaaacaaaggaccac |
295 |
Q |
| |
|
||||||||||| ||||||| ||||||| ||||||||| |||| ||||||||||||| |||||| | |||||||| ||||||||||||||| ||||| |
|
|
| T |
18166697 |
tttaactttacgttcaaagtaacatagagcttgtcaccaactctatcaataaaccgaaagtatgcatgtctccattttctaataagaaacaaagaaccac |
18166598 |
T |
|
| Q |
296 |
aaatcccccaaaaacctactgcaaatccaactcccatacctagatacaatgattctcttatagattcatc |
365 |
Q |
| |
|
|||||||||| |||||||||||||||||||||||||| ||||| ||||| ||||||||||||| ||||| |
|
|
| T |
18166597 |
aaatcccccagaaacctactgcaaatccaactcccatgcctaggtacaaccattctcttatagagtcatc |
18166528 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #18
Raw Score: 90; E-Value: 2e-43
Query Start/End: Original strand, 196 - 365
Target Start/End: Complemental strand, 19456837 - 19456668
Alignment:
| Q |
196 |
tttaactttaccatcaaagttacatagatcttgtcacccactccatcaataaaccgatagtatgtgttcctccatttcttaataagaaacaaaggaccac |
295 |
Q |
| |
|
|||||||||||||||||||||||||||| | ||| ||||||||||| |||| || | |||||| | |||||||||| ||||||||||||||| ||||| |
|
|
| T |
19456837 |
tttaactttaccatcaaagttacatagaccctgttacccactccatatataacccaaaagtatgcatgcctccatttcctaataagaaacaaagaaccac |
19456738 |
T |
|
| Q |
296 |
aaatcccccaaaaacctactgcaaatccaactcccatacctagatacaatgattctcttatagattcatc |
365 |
Q |
| |
|
|||||||||| ||||||||||||||||||||||||| || ||| ||| ||||||||||||||| ||||| |
|
|
| T |
19456737 |
aaatcccccagaaacctactgcaaatccaactcccaagccgagaaacattgattctcttatagagtcatc |
19456668 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #19
Raw Score: 87; E-Value: 1e-41
Query Start/End: Original strand, 196 - 410
Target Start/End: Complemental strand, 18017563 - 18017349
Alignment:
| Q |
196 |
tttaactttaccatcaaagttacatagatcttgtcacccactccatcaataaaccgatagtatgtgttcctccatttcttaataagaaacaaaggaccac |
295 |
Q |
| |
|
|||||||||||||||||||||||||| | ||| ||||||||||| ||||||||| | |||| | ||||||||| |||| |||||||||| ||||| |
|
|
| T |
18017563 |
tttaactttaccatcaaagttacataaagtctgttacccactccatatataaaccgaaaatatgcatgcctccattttctaatgagaaacaaagaaccac |
18017464 |
T |
|
| Q |
296 |
aaatcccccaaaaacctactgcaaatccaactcccatacctagatacaatgattctcttatagattcatcgtctaaatttcctctagatggcattgcctt |
395 |
Q |
| |
|
|||||||||| |||||| ||||||| ||||||||||| |||||||||||||||||| ||||||||||||| || ||| || ||||||||||||| | |
|
|
| T |
18017463 |
aaatcccccagaaacctgctgcaaagccaactcccatgcctagatacaatgattcttttatagattcatcatcctcattctctgtagatggcattgcagt |
18017364 |
T |
|
| Q |
396 |
tttatgatattcttc |
410 |
Q |
| |
|
|||| ||| |||||| |
|
|
| T |
18017363 |
tttaggattttcttc |
18017349 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #20
Raw Score: 87; E-Value: 1e-41
Query Start/End: Original strand, 148 - 362
Target Start/End: Complemental strand, 19401315 - 19401101
Alignment:
| Q |
148 |
taggttcactaaccttaacttgtagaagctcgatttctataaaagtagtttaactttaccatcaaagttacatagatcttgtcacccactccatcaataa |
247 |
Q |
| |
|
|||||||||||||||| ||| | | |||||| | |||||| |||| |||||||||||||||||||||||||||| | ||| ||||||||||| || | |
|
|
| T |
19401315 |
taggttcactaacctttactagcaaaagctcaacttctatgaaagctatttaactttaccatcaaagttacatagagcctgttacccactccatatatga |
19401216 |
T |
|
| Q |
248 |
accgatagtatgtgttcctccatttcttaataagaaacaaaggaccacaaatcccccaaaaacctactgcaaatccaactcccatacctagatacaatga |
347 |
Q |
| |
|
||||| | |||| | ||||||||| |||| |||||||||| ||||||||||||||| ||||||||||||||||| |||||||| || || ||||| || |
|
|
| T |
19401215 |
accgaaaatatgcatgcctccattttctaatgagaaacaaagaaccacaaatcccccagaaacctactgcaaatcccactcccatgccaaggtacaacga |
19401116 |
T |
|
| Q |
348 |
ttctcttatagattc |
362 |
Q |
| |
|
|||| |||||||||| |
|
|
| T |
19401115 |
ttcttttatagattc |
19401101 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #21
Raw Score: 86; E-Value: 6e-41
Query Start/End: Original strand, 196 - 365
Target Start/End: Complemental strand, 19352933 - 19352764
Alignment:
| Q |
196 |
tttaactttaccatcaaagttacatagatcttgtcacccactccatcaataaaccgatagtatgtgttcctccatttcttaataagaaacaaaggaccac |
295 |
Q |
| |
|
|||||||||||||| ||||||||||| | | ||| ||||||||||| ||||||||| | |||| | ||||||||| ||||||||||||||| ||||| |
|
|
| T |
19352933 |
tttaactttaccattaaagttacataaagcctgttacccactccatatataaaccgaaaatatgcatgcctccattttctaataagaaacaaagaaccac |
19352834 |
T |
|
| Q |
296 |
aaatcccccaaaaacctactgcaaatccaactcccatacctagatacaatgattctcttatagattcatc |
365 |
Q |
| |
|
|||||||||| |||||| ||||||||||||||||||| |||||||||||||||||| |||| || ||||| |
|
|
| T |
19352833 |
aaatcccccagaaacctgctgcaaatccaactcccatgcctagatacaatgattcttttatggagtcatc |
19352764 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #22
Raw Score: 82; E-Value: 1e-38
Query Start/End: Original strand, 196 - 365
Target Start/End: Complemental strand, 18148359 - 18148190
Alignment:
| Q |
196 |
tttaactttaccatcaaagttacatagatcttgtcacccactccatcaataaaccgatagtatgtgttcctccatttcttaataagaaacaaaggaccac |
295 |
Q |
| |
|
||||||||||| |||| ||| ||||||| | ||||||||||| ||||| |||||| |||| | | |||||||||| ||||||||||||||| ||||| |
|
|
| T |
18148359 |
tttaactttacgatcacagtaacatagagatagtcacccactctatcaactaaccgaaagtacgcatgcctccatttcctaataagaaacaaagaaccac |
18148260 |
T |
|
| Q |
296 |
aaatcccccaaaaacctactgcaaatccaactcccatacctagatacaatgattctcttatagattcatc |
365 |
Q |
| |
|
|||||||||| ||||||||||||||||| |||||||| |||| |||||| || ||||||||||||||||| |
|
|
| T |
18148259 |
aaatcccccagaaacctactgcaaatcccactcccatgcctaaatacaacgactctcttatagattcatc |
18148190 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #23
Raw Score: 82; E-Value: 1e-38
Query Start/End: Original strand, 196 - 365
Target Start/End: Complemental strand, 19438487 - 19438318
Alignment:
| Q |
196 |
tttaactttaccatcaaagttacatagatcttgtcacccactccatcaataaaccgatagtatgtgttcctccatttcttaataagaaacaaaggaccac |
295 |
Q |
| |
|
||||||||||| |||||||| ||||| | | ||||| |||| ||||| |||||| |||| | | |||||||||| |||||||||||| || ||||| |
|
|
| T |
19438487 |
tttaactttactatcaaagtaacataaagatagtcacacactgtatcaactaaccgaaagtacgcatgcctccatttcctaataagaaacatagaaccac |
19438388 |
T |
|
| Q |
296 |
aaatcccccaaaaacctactgcaaatccaactcccatacctagatacaatgattctcttatagattcatc |
365 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||| ||||||||||| || ||||||||||||||||| |
|
|
| T |
19438387 |
aaatcccccaaaaacctactgcaaatccaactcccatgcctagatacaacgactctcttatagattcatc |
19438318 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #24
Raw Score: 79; E-Value: 8e-37
Query Start/End: Original strand, 198 - 332
Target Start/End: Original strand, 24493241 - 24493375
Alignment:
| Q |
198 |
taactttaccatcaaagttacatagatcttgtcacccactccatcaataaaccgatagtatgtgttcctccatttcttaataagaaacaaaggaccacaa |
297 |
Q |
| |
|
|||||| ||||||||||||||||||||| |||||||||||||||| |||||||| ||||| | || |||||||||| |||||||||| ||||||||||| |
|
|
| T |
24493241 |
taacttcaccatcaaagttacatagatcctgtcacccactccatcgataaaccggtagtacgcgtgcctccatttcctaataagaaataaaggaccacac |
24493340 |
T |
|
| Q |
298 |
atcccccaaaaacctactgcaaatccaactcccat |
332 |
Q |
| |
|
||| ||||||||||||| |||| ||||||||||| |
|
|
| T |
24493341 |
atcaaccaaaaacctactccaaacccaactcccat |
24493375 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #25
Raw Score: 78; E-Value: 3e-36
Query Start/End: Original strand, 196 - 365
Target Start/End: Complemental strand, 17943495 - 17943326
Alignment:
| Q |
196 |
tttaactttaccatcaaagttacatagatcttgtcacccactccatcaataaaccgatagtatgtgttcctccatttcttaataagaaacaaaggaccac |
295 |
Q |
| |
|
||||||||||| |||||||| ||||||| ||||| ||||||| ||||||||||||| || ||| | ||||||||| |||||| |||||||| ||||| |
|
|
| T |
17943495 |
tttaactttacgatcaaagtaacatagagtttgtcgcccactctatcaataaaccgaaagcatgcatgcctccattttctaataaaaaacaaagaaccac |
17943396 |
T |
|
| Q |
296 |
aaatcccccaaaaacctactgcaaatccaactcccatacctagatacaatgattctcttatagattcatc |
365 |
Q |
| |
|
||||||||||||||||| ||||||||||||| ||||| || || |||| ||||||| ||||||| ||||| |
|
|
| T |
17943395 |
aaatcccccaaaaacctgctgcaaatccaacccccatgccaaggtacagtgattcttttatagagtcatc |
17943326 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #26
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 196 - 365
Target Start/End: Complemental strand, 19462721 - 19462552
Alignment:
| Q |
196 |
tttaactttaccatcaaagttacatagatcttgtcacccactccatcaataaaccgatagtatgtgttcctccatttcttaataagaaacaaaggaccac |
295 |
Q |
| |
|
||||||||||| ||||||| ||||||| ||||||||||| ||||| |||||| |||| | | |||||||||| |||||||||||||| ||||| |
|
|
| T |
19462721 |
tttaactttacggtcaaagtaacatagagaaagtcacccactctatcaactaaccgaaagtacgcatgcctccatttccgaataagaaacaaagaaccac |
19462622 |
T |
|
| Q |
296 |
aaatcccccaaaaacctactgcaaatccaactcccatacctagatacaatgattctcttatagattcatc |
365 |
Q |
| |
|
|||| ||||| ||||||||||||||||| |||||||| |||| |||||| || ||||||||||||||||| |
|
|
| T |
19462621 |
aaatgccccagaaacctactgcaaatcccactcccatgcctaaatacaacgactctcttatagattcatc |
19462552 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #27
Raw Score: 66; E-Value: 5e-29
Query Start/End: Original strand, 196 - 365
Target Start/End: Complemental strand, 18105037 - 18104868
Alignment:
| Q |
196 |
tttaactttaccatcaaagttacatagatcttgtcacccactccatcaataaaccgatagtatgtgttcctccatttcttaataagaaacaaaggaccac |
295 |
Q |
| |
|
||||||||||| |||||||| ||||||| | ||||||||||| || || |||||| |||||| | |||||||||| |||||||||||| || ||| |
|
|
| T |
18105037 |
tttaactttacgatcaaagtaacatagagatagtcacccactctattaactaaccgaaagtatgcatgcctccatttcctaataagaaacatagaaccga |
18104938 |
T |
|
| Q |
296 |
aaatcccccaaaaacctactgcaaatccaactcccatacctagatacaatgattctcttatagattcatc |
365 |
Q |
| |
|
|||||||| | || |||||||||||||| |||||||| |||| |||||| || ||||||||||||||||| |
|
|
| T |
18104937 |
aaatccccaagaatcctactgcaaatcccactcccatgcctaaatacaacgactctcttatagattcatc |
18104868 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #28
Raw Score: 61; E-Value: 5e-26
Query Start/End: Original strand, 196 - 364
Target Start/End: Complemental strand, 19415725 - 19415557
Alignment:
| Q |
196 |
tttaactttaccatcaaagttacatagatcttgtcacccactccatcaataaaccgatagtatgtgttcctccatttcttaataagaaacaaaggaccac |
295 |
Q |
| |
|
||||||||||| | |||||| ||||||| ||| | |||||| |||||||||||| |||||| | ||| ||||| |||||||||| | || ||||| |
|
|
| T |
19415725 |
tttaactttacgaccaaagtaacatagagattgccggccactctatcaataaaccggaagtatgcatgcctgcattttctaataagaaaaatagaaccac |
19415626 |
T |
|
| Q |
296 |
aaatcccccaaaaacctactgcaaatccaactcccatacctagatacaatgattctcttatagattcat |
364 |
Q |
| |
|
|||||||||| ||||||||||||||||| |||||||| |||||||||||||| ||| | ||||| |||| |
|
|
| T |
19415625 |
aaatcccccagaaacctactgcaaatcccactcccattcctagatacaatgaatctttcatagaatcat |
19415557 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #29
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 196 - 340
Target Start/End: Original strand, 24496689 - 24496823
Alignment:
| Q |
196 |
tttaactttaccatcaaagttacatagatcttgtcacccactccatcaataaaccgatagtatgtgttcctccatttcttaataagaaacaaaggaccac |
295 |
Q |
| |
|
||||| |||||||||||||||||||||| ||||||| || |||||| |||||||||| | || ||||||| ||||| ||||||||||||||| |
|
|
| T |
24496689 |
tttaaatttaccatcaaagttacatagagcttgtca---------tcgataaactgatagtatgtatgcc-ccatttcctaatacgaaacaaaggaccac |
24496778 |
T |
|
| Q |
296 |
aaatcccccaaaaacctactgcaaatccaactcccatacctagat |
340 |
Q |
| |
|
| ||| ||| ||||||| | |||||||||||||||| ||||||| |
|
|
| T |
24496779 |
agatcaaccagaaacctattccaaatccaactcccatgcctagat |
24496823 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #30
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 294 - 359
Target Start/End: Complemental strand, 16003585 - 16003520
Alignment:
| Q |
294 |
acaaatcccccaaaaacctactgcaaatccaactcccatacctagatacaatgattctcttataga |
359 |
Q |
| |
|
|||||| |||||||| | |||||||||||||||||| || |||| |||||| ||||||| ||||| |
|
|
| T |
16003585 |
acaaataccccaaaagcttactgcaaatccaactcctatgcctaaatacaacaattctctaataga |
16003520 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0274 (Bit Score: 83; Significance: 3e-39; HSPs: 2)
Name: scaffold0274
Description:
Target: scaffold0274; HSP #1
Raw Score: 83; E-Value: 3e-39
Query Start/End: Original strand, 189 - 347
Target Start/End: Complemental strand, 22134 - 21976
Alignment:
| Q |
189 |
aaagtagtttaactttaccatcaaagttacatagatcttgtcacccactccatcaataaaccgatagtatgtgttcctccatttcttaataagaaacaaa |
288 |
Q |
| |
|
||||| |||||||||||| ||| |||| ||||||| |||||||||||||| |||||||||||||||||||| | ||||||||| |||| ||||||||| |
|
|
| T |
22134 |
aaagttgtttaactttacaatcgaagtaacatagagcttgtcacccactctatcaataaaccgatagtatgcatgcctccattttgtaatgagaaacaaa |
22035 |
T |
|
| Q |
289 |
ggaccacaaatcccccaaaaacctactgcaaatccaactcccatacctagatacaatga |
347 |
Q |
| |
|
| |||| |||||||||| ||||| |||||||||||||| ||||| || ||||||||||| |
|
|
| T |
22034 |
gaaccaaaaatcccccagaaaccaactgcaaatccaacccccatgccaagatacaatga |
21976 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0274; HSP #2
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 189 - 347
Target Start/End: Original strand, 2022 - 2180
Alignment:
| Q |
189 |
aaagtagtttaactttaccatcaaagttacatagatcttgtcacccactccatcaataaaccgatagtatgtgttcctccatttcttaataagaaacaaa |
288 |
Q |
| |
|
||||| |||||||||||| ||| |||| ||||||| |||||||||||||| |||||||||||||||||||| | ||||||||| |||| ||||||||| |
|
|
| T |
2022 |
aaagttgtttaactttacaatcgaagtaacatagagcttgtcacccactctatcaataaaccgatagtatgcatgcctccattttgtaatgagaaacaaa |
2121 |
T |
|
| Q |
289 |
ggaccacaaatcccccaaaaacctactgcaaatccaactcccatacctagatacaatga |
347 |
Q |
| |
|
| ||| |||||||||| ||||| ||||||||||||| ||||| || ||||||||||| |
|
|
| T |
2122 |
gaaccgaaaatcccccagaaaccaactgcaaatccaatccccatgccaagatacaatga |
2180 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0648 (Bit Score: 76; Significance: 5e-35; HSPs: 1)
Name: scaffold0648
Description:
Target: scaffold0648; HSP #1
Raw Score: 76; E-Value: 5e-35
Query Start/End: Original strand, 189 - 347
Target Start/End: Original strand, 2551 - 2710
Alignment:
| Q |
189 |
aaagtagtttaactttaccatcaaagttacatagatcttgtcacccactccatcaataaaccgatagtatgtgttcctccatttcttaataagaaacaaa |
288 |
Q |
| |
|
||||| |||||||||||| ||| |||| ||||||| |||||||||||||| |||||||||||||||||||| | ||||||||| |||| ||||||||| |
|
|
| T |
2551 |
aaagttgtttaactttacaatcgaagtaacatagagcttgtcacccactctatcaataaaccgatagtatgcatgcctccattttgtaatgagaaacaaa |
2650 |
T |
|
| Q |
289 |
ggaccacaaat-cccccaaaaacctactgcaaatccaactcccatacctagatacaatga |
347 |
Q |
| |
|
| |||| |||| |||||| ||||| |||||||||||||| ||||| || ||||||||||| |
|
|
| T |
2651 |
gaaccaaaaatacccccagaaaccaactgcaaatccaacccccatgccaagatacaatga |
2710 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0640 (Bit Score: 75; Significance: 2e-34; HSPs: 1)
Name: scaffold0640
Description:
Target: scaffold0640; HSP #1
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 189 - 347
Target Start/End: Complemental strand, 6951 - 6793
Alignment:
| Q |
189 |
aaagtagtttaactttaccatcaaagttacatagatcttgtcacccactccatcaataaaccgatagtatgtgttcctccatttcttaataagaaacaaa |
288 |
Q |
| |
|
||||| |||||||||||| ||| |||| ||||||| |||||||||||||| |||||||||||||||||||| | ||||||||| |||| ||||||||| |
|
|
| T |
6951 |
aaagttgtttaactttacaatcgaagtaacatagagcttgtcacccactctatcaataaaccgatagtatgcatgcctccattttgtaatgagaaacaaa |
6852 |
T |
|
| Q |
289 |
ggaccacaaatcccccaaaaacctactgcaaatccaactcccatacctagatacaatga |
347 |
Q |
| |
|
| ||| |||||||||| ||||| ||||||||||||| ||||| || ||||||||||| |
|
|
| T |
6851 |
gaaccgaaaatcccccagaaaccaactgcaaatccaatccccatgccaagatacaatga |
6793 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0271 (Bit Score: 75; Significance: 2e-34; HSPs: 1)
Name: scaffold0271
Description:
Target: scaffold0271; HSP #1
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 189 - 347
Target Start/End: Complemental strand, 12049 - 11891
Alignment:
| Q |
189 |
aaagtagtttaactttaccatcaaagttacatagatcttgtcacccactccatcaataaaccgatagtatgtgttcctccatttcttaataagaaacaaa |
288 |
Q |
| |
|
||||| |||||||||||| ||| |||| ||||||| |||||||||||||| |||||||||||||||||||| | ||||||||| |||| ||||||||| |
|
|
| T |
12049 |
aaagttgtttaactttacaatcgaagtaacatagagcttgtcacccactctatcaataaaccgatagtatgcatgcctccattttgtaatgagaaacaaa |
11950 |
T |
|
| Q |
289 |
ggaccacaaatcccccaaaaacctactgcaaatccaactcccatacctagatacaatga |
347 |
Q |
| |
|
| ||| |||||||||| ||||| ||||||||||||| ||||| || ||||||||||| |
|
|
| T |
11949 |
gaaccgaaaatcccccagaaaccaactgcaaatccaatccccatgccaagatacaatga |
11891 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 72; Significance: 1e-32; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 106 - 359
Target Start/End: Original strand, 13665313 - 13665570
Alignment:
| Q |
106 |
ataaaacaaaatattgtatagtttgatcaat-aaactgtgaagtaggttc---actaaccttaacttgtagaagctcgatttctataaaagtagtttaac |
201 |
Q |
| |
|
||||||||||||||| |||||| | |||||| ||||||||||||||||| ||||||||||||| || ||||| || || |||| |||||| |
|
|
| T |
13665313 |
ataaaacaaaatattctatagtctaatcaatgaaactgtgaagtaggtttttaactaaccttaactaacagcagctcagttcctgcgaaagctatttaac |
13665412 |
T |
|
| Q |
202 |
tttaccatcaaagttacatagatcttgtcacccactccatcaataaaccgatagtatgtgttcctccatttcttaataagaaacaaaggaccacaaatcc |
301 |
Q |
| |
|
|||||||||||||| | ||||| ||||| ||||||| ||||| ||||||| || ||| | ||||||||| ||||||||||||||| |||||| |||| |
|
|
| T |
13665413 |
tttaccatcaaagtaatatagagattgtcgcccactctatcaaaaaaccgaaagcatgcatgcctccattttctaataagaaacaaagaaccacatatcc |
13665512 |
T |
|
| Q |
302 |
cccaaaaacctactgcaaatccaactcccatacctagatacaatgattctcttataga |
359 |
Q |
| |
|
|||| |||||| ||||||||||||| ||||| || || | |||||||||| ||||||| |
|
|
| T |
13665513 |
cccagaaacctgctgcaaatccaacccccatgccaaggttcaatgattcttttataga |
13665570 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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