View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19471_low_3 (Length: 367)
Name: NF19471_low_3
Description: NF19471
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19471_low_3 |
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Alignment Details
Target: chr4 (Bit Score: 286; Significance: 1e-160; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 286; E-Value: 1e-160
Query Start/End: Original strand, 11 - 352
Target Start/End: Complemental strand, 49535562 - 49535221
Alignment:
| Q |
11 |
aatgatacggccacaattacaaatatagttgcaaagatttctataattgttatgttgcgtggttgtggataacaatttaaaaccattatagattcttgtt |
110 |
Q |
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| T |
49535562 |
aatgatacggccacaattacgaatgtagttgcaaagatttctataattgttatgttgcgtggttgtggatagcaatttaaaaccattacagattcttgtt |
49535463 |
T |
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| Q |
111 |
catgcttcttgtttttaattttaactaacttcataatattcaaagccttcatcatcgccatcaccattcacctnnnnnnnncaaccggtataaagtcact |
210 |
Q |
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| T |
49535462 |
catgcttcttgtttttaattttaactaacttcataatattcaaagccttcatcatcgccatcaccattcacct-aaaaaaacaaccggtataaagtcact |
49535364 |
T |
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| Q |
211 |
ttctagatggtttcttcaaacacagaattattaatcagcagatattaattagtagatgtcaacacataagtccaatattttaagggat-ggaccactttc |
309 |
Q |
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| T |
49535363 |
ttctagatggtttcttcaaacacagaattattaatcagcagatattaattagtagatgtcaagacataagtccaatattttaagggatgggaccactttc |
49535264 |
T |
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| Q |
310 |
aaccacatcaacaattatacttagtagatgtcaacacataagt |
352 |
Q |
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| T |
49535263 |
aaccacatcaacaattatacttagtagatgtcaacacataagt |
49535221 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 32; Significance: 0.000000008; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 50 - 93
Target Start/End: Original strand, 7524430 - 7524473
Alignment:
| Q |
50 |
tctataattgttatgttgcgtggttgtggataacaatttaaaac |
93 |
Q |
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| T |
7524430 |
tctataattgttatgttgcgtggttgtggagagcaatttgaaac |
7524473 |
T |
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