View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19471_low_4 (Length: 349)
Name: NF19471_low_4
Description: NF19471
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19471_low_4 |
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| [»] chr7 (2 HSPs) |
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Alignment Details
Target: chr7 (Bit Score: 119; Significance: 9e-61; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 119; E-Value: 9e-61
Query Start/End: Original strand, 231 - 349
Target Start/End: Complemental strand, 35443393 - 35443275
Alignment:
| Q |
231 |
ctctaatatttgcgatacgtcaagtggatccgcaatgcatactcttattactcgtcaagatgttgaccaggtaattaattgacctctctctaatgatatg |
330 |
Q |
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| T |
35443393 |
ctctaatatttgcgatacgtcaagtggatccgcaatgcatactcttattactcgtcaagatgttgaccaggtaattaattgacctctctctaatgatatg |
35443294 |
T |
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| Q |
331 |
atacacttcactcattgtt |
349 |
Q |
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| T |
35443293 |
atacacttcactcattgtt |
35443275 |
T |
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Target: chr7; HSP #2
Raw Score: 64; E-Value: 6e-28
Query Start/End: Original strand, 1 - 72
Target Start/End: Complemental strand, 35443609 - 35443538
Alignment:
| Q |
1 |
tatctaaataaaaatgttatttattcaaaaagtcaaataatttgattttgtaccttgaatatataattttat |
72 |
Q |
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||||||||||||||||||||||||||||||||| ||||||||||||||||||| |||||||||||||||||| |
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| T |
35443609 |
tatctaaataaaaatgttatttattcaaaaagttaaataatttgattttgtacattgaatatataattttat |
35443538 |
T |
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