View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19471_low_5 (Length: 347)
Name: NF19471_low_5
Description: NF19471
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19471_low_5 |
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Alignment Details
Target: chr1 (Bit Score: 286; Significance: 1e-160; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 286; E-Value: 1e-160
Query Start/End: Original strand, 33 - 342
Target Start/End: Complemental strand, 14157752 - 14157443
Alignment:
| Q |
33 |
aaattctatccgcagatcgaattctcagcaacaacacggcaaatagaatggtcacagcagatcgtatataggaaaagaatgataagcacttcattcaagg |
132 |
Q |
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| T |
14157752 |
aaattctatcagcagatcgaattctcagcaacaacacggcaaatagaatgatcacagcagatcgtatataggaaaagaatgataagcacttcattcaagg |
14157653 |
T |
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| Q |
133 |
aatataaactgcagaagtataaattgcgactaaccttatacgctaagaaatatggttaaatattacatgatataatacttgcatgaagttactccaatag |
232 |
Q |
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| T |
14157652 |
aatataaactgcagaagtataaattgcgacaaaccttatacgctaagaaatatggttaaatattacatgatataatacttgcatgaagttactccaatag |
14157553 |
T |
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| Q |
233 |
catatttcagaataaaattgtctaaacctttcaaattattatattttgccctaatgaagtgaaaataatgacatatcaaaagaatgaaaatactaactag |
332 |
Q |
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| T |
14157552 |
catatttcagaataaaattgtctaaacctttcaaattattatattctgccctaatgaagtgaaaataatgacatatcaaaagaatgaaaatactaactaa |
14157453 |
T |
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| Q |
333 |
aattatctac |
342 |
Q |
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| T |
14157452 |
aataatctac |
14157443 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 68; E-Value: 3e-30
Query Start/End: Original strand, 113 - 270
Target Start/End: Complemental strand, 14141942 - 14141789
Alignment:
| Q |
113 |
gataagcacttcattcaaggaatataaactgcagaagtataaattgcgactaaccttatacgctaagaaatatggttaaatattacatgatataatactt |
212 |
Q |
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| T |
14141942 |
gataatcacttcattcaaggaatataaactgcagaagtataaattatgacaaaccttacattctaaaatatatagttaaatatcacatgatataatattt |
14141843 |
T |
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| Q |
213 |
gcatgaagttactccaatagcatatttcagaataaaattgtctaaacctttcaaatta |
270 |
Q |
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| T |
14141842 |
acatcaagttactccaataacata--tcagaat--aactgtctaaacctttcatatta |
14141789 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 34 - 88
Target Start/End: Original strand, 14157730 - 14157784
Alignment:
| Q |
34 |
aattctatccgcagatcgaattctcagcaacaacacggcaaatagaatggtcaca |
88 |
Q |
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| T |
14157730 |
aattcgatctgctgatagaattttcagcaacaacacggcaaatagaatgatcaca |
14157784 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 95; Significance: 2e-46; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 95; E-Value: 2e-46
Query Start/End: Original strand, 174 - 328
Target Start/End: Original strand, 37173342 - 37173495
Alignment:
| Q |
174 |
gctaagaaatatggttaaatattacatgatataatacttgcatgaagttactccaatagcatatttcagaataaaattgtctaaacctttcaaattatta |
273 |
Q |
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| T |
37173342 |
gctaaaaaatatggttaaaaattacatgatataatacttgcatgaagttactccaataacatatttcagaat-aaattgtctaaacctttgaaattattg |
37173440 |
T |
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| Q |
274 |
tattttgccctaatgaagtgaaaataatgacatatcaaaagaatgaaaatactaa |
328 |
Q |
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| T |
37173441 |
tatattgccctaataaattgaaaataatggaataccaagagaatgaaaatgctaa |
37173495 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 119 - 170
Target Start/End: Original strand, 37173256 - 37173307
Alignment:
| Q |
119 |
cacttcattcaaggaatataaactgcagaagtataaattgcgactaacctta |
170 |
Q |
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| T |
37173256 |
cacttcatccaaggaatataaaccgtagaagtataaattgcgacaaacctta |
37173307 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 37; Significance: 0.000000000008; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 255 - 328
Target Start/End: Original strand, 1036685 - 1036760
Alignment:
| Q |
255 |
taaacctttcaaattattatattt--tgccctaatgaagtgaaaataatgacatatcaaaagaatgaaaatactaa |
328 |
Q |
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|||||||||||||||||| | | | | |||||||||| ||||||||||| ||||| ||||||||||||||||||| |
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| T |
1036685 |
taaacctttcaaattattctctatgctaccctaatgaattgaaaataatggcatatgaaaagaatgaaaatactaa |
1036760 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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