View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19471_low_8 (Length: 264)
Name: NF19471_low_8
Description: NF19471
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19471_low_8 |
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Alignment Details
Target: chr7 (Bit Score: 173; Significance: 4e-93; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 173; E-Value: 4e-93
Query Start/End: Original strand, 18 - 254
Target Start/End: Original strand, 45829512 - 45829743
Alignment:
| Q |
18 |
tgaaagactcctaacacaccactgctaatttcggaatcattcaatctgttggtttatacgacacgctccgtcgcggctaggagaggtgggatgatttctt |
117 |
Q |
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| T |
45829512 |
tgaaagactcctaacacaccactgctaatatcggaatcattcaatcctttggtttatatgacacgctccgtcgcggctaggagagctgggatgatttctt |
45829611 |
T |
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| Q |
118 |
ctccttttcactgctatgtgtaagttttttctccttctccttctccttctccttggtatattttttccctcatctttaaatccagatttgtgtaagtttt |
217 |
Q |
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| T |
45829612 |
ctccttttcactcccatgtgtaagttttttctccttctccttct-----tcgttggtatattttttccctcatctttaaatccagatttgtgtaagtttt |
45829706 |
T |
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| Q |
218 |
tcaccttcaatttcttccctttttatgtgtatgatga |
254 |
Q |
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| T |
45829707 |
tcaccttcaatatcttccccttttatgtgtttgatga |
45829743 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 73 - 114
Target Start/End: Complemental strand, 13096128 - 13096087
Alignment:
| Q |
73 |
atacgacacgctccgtcgcggctaggagaggtgggatgattt |
114 |
Q |
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| T |
13096128 |
atacgacacgctccgtcgcggctagtagcggtgggctgattt |
13096087 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 77; Significance: 8e-36; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 77; E-Value: 8e-36
Query Start/End: Original strand, 122 - 254
Target Start/End: Complemental strand, 22141450 - 22141323
Alignment:
| Q |
122 |
ttttcactgctatgtgtaagttttttctccttctccttctccttctccttggtatattttttccctcatctttaaatccagatttgtgtaagtttttcac |
221 |
Q |
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| T |
22141450 |
ttttcactgctatgtgtaagttttttctcatcctccttctccgt-----tggtatattttttccatcatctttaaatccagatttgtttaagtttttcac |
22141356 |
T |
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| Q |
222 |
cttcaatttcttccctttttatgtgtatgatga |
254 |
Q |
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| T |
22141355 |
cttcactttcatccccttttatgtgtttgatga |
22141323 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 67 - 125
Target Start/End: Complemental strand, 22141820 - 22141762
Alignment:
| Q |
67 |
tggtttatacgacacgctccgtcgcggctaggagaggtgggatgatttcttctcctttt |
125 |
Q |
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| T |
22141820 |
tggtttatacgacacgcaccgtcgcggctaggagaggtgggctgatttcttctcctttt |
22141762 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 30; Significance: 0.00000009; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 61 - 114
Target Start/End: Complemental strand, 43045846 - 43045793
Alignment:
| Q |
61 |
atctgttggtttatacgacacgctccgtcgcggctaggagaggtgggatgattt |
114 |
Q |
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| T |
43045846 |
atctgttggtttctacgacacgctccgttgcggttaggaacggtgggctgattt |
43045793 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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