View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19471_low_9 (Length: 259)
Name: NF19471_low_9
Description: NF19471
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19471_low_9 |
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Alignment Details
Target: chr4 (Bit Score: 239; Significance: 1e-132; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 239; E-Value: 1e-132
Query Start/End: Original strand, 1 - 243
Target Start/End: Original strand, 7621389 - 7621631
Alignment:
| Q |
1 |
atacatgcttccaccatttgaagtaggagtaataggtccacatatatcttaatgaataaggtgcaaatttttagtggctcttcaatttgcatttttggaa |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
7621389 |
atacatgcttccaccatttgaagtaggagtaataggtccacatatatcttaatgaataaggtgcaaatttttagtggctcttcaatttgcatttttggaa |
7621488 |
T |
|
| Q |
101 |
ttgaatctctatgttgctttcctatcacacagtcaacacaaatttcttcagtttcttgcaagataggtaaccctttaaacatatctttcttagctagtgt |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
7621489 |
ttgaatctctatgttgctttcctatcacacagtcaacacaaatttcttcagtttcttgcaagataggtaaccctttaaacatatctttcttagctagtgt |
7621588 |
T |
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| Q |
201 |
atccaaaccctataagcttagatgtgcatatctataatgccat |
243 |
Q |
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||||||||||| ||||||||||||||||||||||||||||||| |
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| T |
7621589 |
atccaaaccctttaagcttagatgtgcatatctataatgccat |
7621631 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 195; Significance: 1e-106; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 195; E-Value: 1e-106
Query Start/End: Original strand, 1 - 243
Target Start/End: Complemental strand, 8922205 - 8921963
Alignment:
| Q |
1 |
atacatgcttccaccatttgaagtaggagtaataggtccacatatatcttaatgaataaggtgcaaatttttagtggctcttcaatttgcatttttggaa |
100 |
Q |
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||||||||||||||||||||| |||||| ||||||||||||||||||||||||||||||| |||| ||||||||||||||||||||||||||||||||| |
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| T |
8922205 |
atacatgcttccaccatttgacgtaggattaataggtccacatatatcttaatgaataagctgcagctttttagtggctcttcaatttgcatttttggaa |
8922106 |
T |
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| Q |
101 |
ttgaatctctatgttgctttcctatcacacagtcaacacaaatttcttcagtttcttgcaagataggtaaccctttaaacatatctttcttagctagtgt |
200 |
Q |
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||||||||||||||||||||||||||||||||||| |||| ||||||||||||||||||||||||||||||||||||| ||||||||||||||| ||||| |
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| T |
8922105 |
ttgaatctctatgttgctttcctatcacacagtcagcacacatttcttcagtttcttgcaagataggtaaccctttaaccatatctttcttagccagtgt |
8922006 |
T |
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| Q |
201 |
atccaaaccctataagcttagatgtgcatatctataatgccat |
243 |
Q |
| |
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|| |||||||| |||||||||||||||||||||||| |||||| |
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| T |
8922005 |
attcaaaccctttaagcttagatgtgcatatctatagtgccat |
8921963 |
T |
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