View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19472_low_2 (Length: 356)
Name: NF19472_low_2
Description: NF19472
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19472_low_2 |
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Alignment Details
Target: chr4 (Bit Score: 172; Significance: 2e-92; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 172; E-Value: 2e-92
Query Start/End: Original strand, 9 - 216
Target Start/End: Complemental strand, 43392675 - 43392468
Alignment:
| Q |
9 |
gataattctaacaggtaacttatgctgctgaatagctcacattttttctctttaattatgttatttcaacttaatttcatagaataactactaacaaata |
108 |
Q |
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| T |
43392675 |
gataactctaacaggtaacttatgctgctgaatagctcacattttttctctttaattatgttatttcaacttaatttcatagaataaccactaacaaata |
43392576 |
T |
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| Q |
109 |
agatnnnnnnnntttccttcttttttaacataaaactaatgatttttattgataaaacgacaactagtacaaatggtattaaatccatcaataagattca |
208 |
Q |
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| T |
43392575 |
agataaaaaaaatttccttcttttttaacataaaactaatgatttttattgataaaacgacaactagtacaaatggtattaaatccatcaataagataca |
43392476 |
T |
|
| Q |
209 |
atataagt |
216 |
Q |
| |
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|||||||| |
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| T |
43392475 |
atataagt |
43392468 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 220 - 339
Target Start/End: Original strand, 35898567 - 35898686
Alignment:
| Q |
220 |
tgtttggttgcacgttcagcactctcaaaagtacgtttgtagtgttgaaacgtgatttcatgaaatttgaatatgtttgaatctgagttgaaaaattgat |
319 |
Q |
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| T |
35898567 |
tgtttggttgcacgtccaacctcctcaaacgcaagtttgtagctttcaaacgtgatttcatgagatttgaagatgttcggatctgagttgaaaagttgat |
35898666 |
T |
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| Q |
320 |
tctagacctcaaacgcaatt |
339 |
Q |
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| | || || |||||||||| |
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| T |
35898667 |
tatggagcttaaacgcaatt |
35898686 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 45 - 110
Target Start/End: Original strand, 30311430 - 30311497
Alignment:
| Q |
45 |
tcacattttttctctttaattatgttatttcaactt--aatttcatagaataactactaacaaataag |
110 |
Q |
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| T |
30311430 |
tcacatttttcatctttaattatgttatctcaacttaaaattttagaaaataactactaacaaataag |
30311497 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 110; Significance: 2e-55; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 110; E-Value: 2e-55
Query Start/End: Original strand, 214 - 339
Target Start/End: Original strand, 33740325 - 33740450
Alignment:
| Q |
214 |
agtgcttgtttggttgcacgttcagcactctcaaaagtacgtttgtagtgttgaaacgtgatttcatgaaatttgaatatgtttgaatctgagttgaaaa |
313 |
Q |
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||||||||||||| |||||||| |||||||||||||| || ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
33740325 |
agtgcttgtttgggtgcacgttaagcactctcaaaagcacctttgtagtgttgaaacgtgatttcatgaaatttgaatatgtttgaatctgagttgaaaa |
33740424 |
T |
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| Q |
314 |
attgattctagacctcaaacgcaatt |
339 |
Q |
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|||||||||||||||||||||||||| |
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| T |
33740425 |
attgattctagacctcaaacgcaatt |
33740450 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 62; Significance: 1e-26; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 214 - 339
Target Start/End: Original strand, 16352883 - 16353008
Alignment:
| Q |
214 |
agtgcttgtttggttgcacgttcagcactctcaaaagtacgtttgtagtgttgaaacgtgatttcatgaaatttgaatatgtttgaatctgagttgaaaa |
313 |
Q |
| |
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||||||||||||||||||||| |||||||| ||| |||||||||| ||||| |||||||||| | | || |||||||||||||| || || |||||||| |
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| T |
16352883 |
agtgcttgtttggttgcacgtccagcactccaaaacgtacgtttgtggtgtttaaacgtgattacttaaattttgaatatgtttggatgtgtgttgaaaa |
16352982 |
T |
|
| Q |
314 |
attgattctagacctcaaacgcaatt |
339 |
Q |
| |
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||||||||| ||||| |||| ||||| |
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| T |
16352983 |
attgattctggaccttaaactcaatt |
16353008 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 275 - 320
Target Start/End: Complemental strand, 12634638 - 12634593
Alignment:
| Q |
275 |
tttcatgaaatttgaatatgtttgaatctgagttgaaaaattgatt |
320 |
Q |
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|||||| | ||||||| ||||||| ||||||||||||||||||||| |
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| T |
12634638 |
tttcataagatttgaagatgtttggatctgagttgaaaaattgatt |
12634593 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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