View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF19472_low_4 (Length: 280)
Name: NF19472_low_4
Description: NF19472
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19472_low_4 |
 | |
|
Alignment Details
Target: chr8 (Bit Score: 250; Significance: 1e-139; HSPs: 4)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 250; E-Value: 1e-139
Query Start/End: Original strand, 1 - 262
Target Start/End: Complemental strand, 35997753 - 35997492
Alignment:
| Q |
1 |
cttatatattgatagttctgagcacctaatttggatatgccactcaaaaggagtagcatgcagcagcatatgctagcacaattccaatgtgagaggttct |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |
|
|
| T |
35997753 |
cttatatattgatagttctgagcacctaatttggatatgccactcaaaaggagtagcatgcagcagcatatgctagcacaattccaatttgagaggttct |
35997654 |
T |
|
| Q |
101 |
tgttatttactttattgtcaattcctttcaaaaaatcatggacttgtctacatcatgatttcttttttcctagtaaatcaaattctttttcctttttggt |
200 |
Q |
| |
|
||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
35997653 |
tgttatttacttttttgtcaattcctttcaaaaaatcatggacttgtctacatcatgatttcttttttcctagtaaatcaaattctttttcctttttggt |
35997554 |
T |
|
| Q |
201 |
agagagtgggatgcatggtcataaagacaaatactttttcccatatacatgcatgaaatata |
262 |
Q |
| |
|
|||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
35997553 |
agagggtgggatgcatggtcataaagacaaatactttttcccatatacatgcatgaaatata |
35997492 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 183; E-Value: 5e-99
Query Start/End: Original strand, 1 - 262
Target Start/End: Complemental strand, 35992987 - 35992727
Alignment:
| Q |
1 |
cttatatattgatagttctgagcacctaatttggatatgccactcaaaaggagtagcatgcagcagcatatgctagcacaattccaatgtgagaggttct |
100 |
Q |
| |
|
||||||||||||||| ||||||||||||| |||||||||||||| |||||||||||||||||||||||||||||| |||||||||||||||||||||||| |
|
|
| T |
35992987 |
cttatatattgatagctctgagcacctaacttggatatgccacttaaaaggagtagcatgcagcagcatatgctaccacaattccaatgtgagaggttct |
35992888 |
T |
|
| Q |
101 |
tgttatttactttattgtcaattcctttcaa-aaaatcatggacttgtctacatcatgatttcttttttcctagtaaatcaaattctttttcctttttgg |
199 |
Q |
| |
|
||||||||||||| ||||||||||||||||| |||| || ||||||||||||||| ||||||||||||||||||||||||||||||||||||| |||||| |
|
|
| T |
35992887 |
tgttatttacttttttgtcaattcctttcaaaaaaaccaaggacttgtctacatcgtgatttcttttttcctagtaaatcaaattctttttcc-ttttgg |
35992789 |
T |
|
| Q |
200 |
tagagagtgggatgcatggtcataaagacaaatactttttcccatatacatgcatgaaatata |
262 |
Q |
| |
|
||||| |||||| ||||||||||||||| |||||||||| | ||| |||||||||||||||| |
|
|
| T |
35992788 |
tagagggtgggaagcatggtcataaaga-taatactttttgctatagacatgcatgaaatata |
35992727 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 145; E-Value: 2e-76
Query Start/End: Original strand, 1 - 239
Target Start/End: Complemental strand, 35982343 - 35982106
Alignment:
| Q |
1 |
cttatatattgatagttctgagcacctaatttggatatgccactcaaaaggagtagcatgcagcagcatatgctagcacaattccaatgtgagaggttct |
100 |
Q |
| |
|
||||||||||||||| ||| ||||||||| |||||||||||||||||||| || || ||| ||||||||||||||||||||||||||| | || ||| | |
|
|
| T |
35982343 |
cttatatattgatagctctaagcacctaacttggatatgccactcaaaagaagcagtatgaagcagcatatgctagcacaattccaatttcag--gtttt |
35982246 |
T |
|
| Q |
101 |
tgttatttactttattgtcaattcctttcaaaaaa-tcatggacttgtctacatcatgatttcttttttcctagtaaatcaaattctttttcctttttgg |
199 |
Q |
| |
|
|||||||||||| |||||||||||||||||||||| ||| ||||||||||||||||||||||| | ||||||||||||||| |||||||||||||||||| |
|
|
| T |
35982245 |
tgttatttacttcattgtcaattcctttcaaaaaaatcaaggacttgtctacatcatgatttcctctttcctagtaaatcagattctttttcctttttgg |
35982146 |
T |
|
| Q |
200 |
tagagagtgggatgcatggtcataaagacaaatacttttt |
239 |
Q |
| |
|
| ||| ||| || ||||||||||||||||||||||||||| |
|
|
| T |
35982145 |
tggagtgtgagaagcatggtcataaagacaaatacttttt |
35982106 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 135; E-Value: 2e-70
Query Start/End: Original strand, 1 - 261
Target Start/End: Complemental strand, 35988267 - 35988007
Alignment:
| Q |
1 |
cttatatattgatagttctgagcacctaatttggatatgccactcaaaaggagtagcatgcagcagcatatgctagcacaattccaatgtgagaggttct |
100 |
Q |
| |
|
||||||||||||||| | ||||||||||| |||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| | || ||||| |
|
|
| T |
35988267 |
cttatatattgatagctttgagcacctaacttggatatgccattcaaaaggagtagcatgcagcagcatatgctagcacaattccaatttcag--gttct |
35988170 |
T |
|
| Q |
101 |
t----gttatttactttattgtcaattcctttcaaaaa-atcatggacttgtctacatcatgatttcttttttcctagtaaatcaaattctttttccttt |
195 |
Q |
| |
|
| ||||||||||| | ||||||||||| ||||||| |||| ||||||||||||||||||||||| | |||||||||||||| |||||||||||||| |
|
|
| T |
35988169 |
taattgttatttacttcaatgtcaattcctatcaaaaatatcaaggacttgtctacatcatgatttcctctttcctagtaaatctgattctttttccttt |
35988070 |
T |
|
| Q |
196 |
ttggtagagagtgggatgcatggtcataaagacaaatactttttcccatatacatgcatgaaatat |
261 |
Q |
| |
|
||| | ||| |||||| |||||||||||||||| ||||||||| | ||||||||||||||||||| |
|
|
| T |
35988069 |
ttgatggag-gtgggaagcatggtcataaagac--atactttttactatatacatgcatgaaatat |
35988007 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University