View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19473_high_15 (Length: 297)
Name: NF19473_high_15
Description: NF19473
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19473_high_15 |
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Alignment Details
Target: chr4 (Bit Score: 253; Significance: 1e-141; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 253; E-Value: 1e-141
Query Start/End: Original strand, 7 - 279
Target Start/End: Original strand, 23697016 - 23697288
Alignment:
| Q |
7 |
tagattattctgtgcacaatgtaaggtttcatggcactctggtgttgattgtagagagtttcaaagcttggaagacggcgagcgagggaggaaagatcta |
106 |
Q |
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| T |
23697016 |
tagattattttgtgcacaatgtaaggtttcatggcactctggtgttgattgtagagagtttcaaagcttggaagatggcgagcgagggaggaaagatcta |
23697115 |
T |
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| Q |
107 |
atggccatggaacttgctaagaacaagagatggaaaagatgtccaaagtgcagcttctatgtggagaaaattgaggggtgcactcgcatttcatgcaggt |
206 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || ||||||||||||||||||| |
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| T |
23697116 |
atggccatggaacttgctaagaacaagagatggaaaagatgtccaaagtgcagcttctatgtggagaaaattgagggatgtactcgcatttcatgcaggt |
23697215 |
T |
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| Q |
207 |
atagacaattctcttttgttaagaattctacttttgcatttttattttgggtgcttgcttaaatattagttat |
279 |
Q |
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| T |
23697216 |
atagacaattctcttttgttaagaattctacttttgcatttttatttttggtgcttgcttaaatattagttat |
23697288 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 163; E-Value: 4e-87
Query Start/End: Original strand, 7 - 241
Target Start/End: Complemental strand, 23700916 - 23700682
Alignment:
| Q |
7 |
tagattattctgtgcacaatgtaaggtttcatggcactctggtgttgattgtagagagtttcaaagcttggaagacggcgagcgagggaggaaagatcta |
106 |
Q |
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|||||| |||||||||||||||||||||||||||||| | ||||||||||||| || ||||||||||||| |||||||||||||||||| | |||||||| |
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| T |
23700916 |
tagattgttctgtgcacaatgtaaggtttcatggcacacaggtgttgattgtaaagtgtttcaaagcttgaaagacggcgagcgagggatggaagatcta |
23700817 |
T |
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| Q |
107 |
atggccatggaacttgctaagaacaagagatggaaaagatgtccaaagtgcagcttctatgtggagaaaattgaggggtgcactcgcatttcatgcaggt |
206 |
Q |
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| T |
23700816 |
atggccatggaacttgcaaagaacaagagatggaaaagatgtccaaagtgtggcttctatgtggaaaaaattgtgggatgtactcgcatttcatgcaggt |
23700717 |
T |
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| Q |
207 |
atagacaattctcttttgttaagaattctactttt |
241 |
Q |
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| T |
23700716 |
atattcaattctcttttgttaaaaattctactttt |
23700682 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 121; E-Value: 5e-62
Query Start/End: Original strand, 7 - 179
Target Start/End: Original strand, 23694885 - 23695057
Alignment:
| Q |
7 |
tagattattctgtgcacaatgtaaggtttcatggcactctggtgttgattgtagagagtttcaaagcttggaagacggcgagcgagggaggaaagatcta |
106 |
Q |
| |
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|||||| |||||||||||||||||||||||||||||| ||||||||||||| |||||||| ||||||| |||| || |||||||||||| |||||||| |
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| T |
23694885 |
tagattgttctgtgcacaatgtaaggtttcatggcacataggtgttgattgtaaagagtttctaagcttgaaagatggtgagcgagggagggaagatcta |
23694984 |
T |
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| Q |
107 |
atggccatggaacttgctaagaacaagagatggaaaagatgtccaaagtgcagcttctatgtggagaaaattg |
179 |
Q |
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| T |
23694985 |
atggccatggaacttgctaagaacaagagatggaaaagatgtccaaagtgtggcttctatgtggaaaaaattg |
23695057 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 50; Significance: 1e-19; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 7 - 241
Target Start/End: Complemental strand, 8149059 - 8148820
Alignment:
| Q |
7 |
tagattattctgtgcacaatgtaaggtttcatggcactctggtgttgattgtagagagtttcaaagcttggaagacggcgagc-gagggaggaa--agat |
103 |
Q |
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|||| ||||||| ||||||||| | ||| |||||||| | | || ||||||||||||||||||| ||| || | |||| | |||| |||| |||| |
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| T |
8149059 |
tagactattctgcgcacaatgtcaagttccatggcacacggaagtcgattgtagagagtttcaaattttgaaaaaaggcggtccgaggaaggatttagat |
8148960 |
T |
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| Q |
104 |
ctaatggccatggaacttgctaagaacaagagatggaaaagatgtccaaagtgcagcttctatgtggagaaaattgaggggtgcactcgcatttcatgca |
203 |
Q |
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|||||||| |||||||||||||||| |||| ||||||||| ||||||| |||| |||||||||||| |||| | || || | || |||| ||||| |
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| T |
8148959 |
ctaatggctctggaacttgctaagaaaaagaaatggaaaaggtgtccaagatgcaacttctatgtggaaaaaaaaggtggatgtaatcacattagatgca |
8148860 |
T |
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| Q |
204 |
ggtatagaca--attctcttttgttaagaattctactttt |
241 |
Q |
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|||||||||| ||| |||| ||||||||||||||||||| |
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| T |
8148859 |
ggtatagacaatattttcttatgttaagaattctactttt |
8148820 |
T |
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