View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19473_high_4 (Length: 488)
Name: NF19473_high_4
Description: NF19473
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19473_high_4 |
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| [»] chr7 (6 HSPs) |
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| [»] scaffold0248 (1 HSPs) |
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| [»] scaffold0045 (1 HSPs) |
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Alignment Details
Target: chr7 (Bit Score: 214; Significance: 1e-117; HSPs: 6)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 214; E-Value: 1e-117
Query Start/End: Original strand, 127 - 488
Target Start/End: Original strand, 11040522 - 11040867
Alignment:
| Q |
127 |
tatgttgccacaagtgtgaaaattgggacttaaaataccaaagacagagtctcacattgaatgaatcacacacattggtagtgtttatatagtggagggt |
226 |
Q |
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||||||| |||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| ||||||||||||||||||||| | |
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| T |
11040522 |
tatgttgtcacaagtgtgaaaattgggacttaaaataccaaagacaaagtctcacattgaatgaatcacacacattagtagtgtttatatagtggaggtt |
11040621 |
T |
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| Q |
227 |
tgtacgtataaagcggtgcacattggtataacgatacact-nnnnnnnnnnngtt-atacatgtagagagatagattgaattcctattatttcaactcat |
324 |
Q |
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| T |
11040622 |
tgtacgtataaagcggtgcacattggtataacgatacactaaaaaaaaaaaagttaatacatgtagagagatagattgaattcctattatttcaactcat |
11040721 |
T |
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| Q |
325 |
gaaccatgagaaagtgatactatgctcttggtatcacaacaaactagggtttatgcaagaaaaataaacaagacagaaatttaaataaactgnnnnnnnn |
424 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| || | ||| ||||| |
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| T |
11040722 |
gaaccatgagaaagtgatactatgctcttggtatcacaacaaactagggtttatgcaacaaaaataaac-tgaaaaaaa---aaata------------- |
11040804 |
T |
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| Q |
425 |
tataacttcattcatatcctctaaggaggcagtcaaacattatatatagctaggttaagttgct |
488 |
Q |
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| T |
11040805 |
-ataacttcattcatatcctctaaggaggcagtcaaacattatatatagctaggttaagttgct |
11040867 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 127 - 231
Target Start/End: Complemental strand, 11060051 - 11059947
Alignment:
| Q |
127 |
tatgttgccacaagtgtgaaaattgggacttaaaataccaaagacagagtctcacattgaatgaatcacacacattggtagtgtttatatagtggagggt |
226 |
Q |
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||||||| ||||||||| || |||| |||| ||| |||||| ||| ||||||||||| |||||||||||||||| ||||||||||||| | |||||| |
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| T |
11060051 |
tatgttgtgacaagtgtggaagttggaacttgaaagaccaaacacaaagtctcacattagatgaatcacacacattactagtgtttatataatagagggt |
11059952 |
T |
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| Q |
227 |
tgtac |
231 |
Q |
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||||| |
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| T |
11059951 |
tgtac |
11059947 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 13 - 53
Target Start/End: Original strand, 11040406 - 11040446
Alignment:
| Q |
13 |
aatatatatatcacacacacaacgacgtcaaatggccggac |
53 |
Q |
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| T |
11040406 |
aatatatatatcacacacgcaacgacgtcaaatggccggac |
11040446 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 309 - 337
Target Start/End: Complemental strand, 7847009 - 7846981
Alignment:
| Q |
309 |
tattatttcaactcatgaaccatgagaaa |
337 |
Q |
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| T |
7847009 |
tattatttcaactcatgaaccatgagaaa |
7846981 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 295 - 339
Target Start/End: Complemental strand, 11059863 - 11059819
Alignment:
| Q |
295 |
atagattgaattcctattatttcaactcatgaaccatgagaaagt |
339 |
Q |
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| T |
11059863 |
atagatttaatttgtattatttcaagtcatgaaccatgagaaagt |
11059819 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #6
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 309 - 337
Target Start/End: Complemental strand, 11073525 - 11073497
Alignment:
| Q |
309 |
tattatttcaactcatgaaccatgagaaa |
337 |
Q |
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||||||||||||||||||||||||||||| |
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| T |
11073525 |
tattatttcaactcatgaaccatgagaaa |
11073497 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0248 (Bit Score: 86; Significance: 7e-41; HSPs: 1)
Name: scaffold0248
Description:
Target: scaffold0248; HSP #1
Raw Score: 86; E-Value: 7e-41
Query Start/End: Original strand, 339 - 488
Target Start/End: Original strand, 20255 - 20404
Alignment:
| Q |
339 |
tgatactatgctcttggtatcacaacaaactagggtttatgcaagaaaaataaacaagacagaaatttaaataaactgnnnnnnnntataacttcattca |
438 |
Q |
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| T |
20255 |
tgatactacgctcttggtattgcaacaagctagggattatgcaaggaaaataaacaagacagaaatttaaataaactgaaaaaaataataacttcattcc |
20354 |
T |
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| Q |
439 |
tatcctctaaggaggcagtcaaacattatatatagctaggttaagttgct |
488 |
Q |
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|||||||||||||||||||| |||| |||||||||||||||||||||||| |
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| T |
20355 |
tatcctctaaggaggcagtcgaacaatatatatagctaggttaagttgct |
20404 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0045 (Bit Score: 33; Significance: 0.000000003; HSPs: 1)
Name: scaffold0045
Description:
Target: scaffold0045; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 180 - 224
Target Start/End: Complemental strand, 84022 - 83978
Alignment:
| Q |
180 |
acattgaatgaatcacacacattggtagtgtttatatagtggagg |
224 |
Q |
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| T |
84022 |
acattgaatggaacacacacattagtagtgtttatatagtggagg |
83978 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 174 - 219
Target Start/End: Original strand, 36936484 - 36936529
Alignment:
| Q |
174 |
agtctcacattgaatgaatcacacacattggtagtgtttatatagt |
219 |
Q |
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|||||||||| ||||| | |||||||||| |||||||||||||||| |
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| T |
36936484 |
agtctcacatcgaatggaacacacacattagtagtgtttatatagt |
36936529 |
T |
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