View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19473_low_10 (Length: 408)
Name: NF19473_low_10
Description: NF19473
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19473_low_10 |
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Alignment Details
Target: chr2 (Bit Score: 358; Significance: 0; HSPs: 9)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 358; E-Value: 0
Query Start/End: Original strand, 1 - 370
Target Start/End: Complemental strand, 2478669 - 2478300
Alignment:
| Q |
1 |
atccttgcgttgattagcatagttctgtgcataagcagcaacttcgttgtcccaaacaatgtttggaattttaatgaatgaatcaactgcagatcttgct |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2478669 |
atccttgcgttgattagcatagttctgtgcataagcagcaacttcgttgtcccaaacaatgtttggaattttaatgaatgaatcaactgcagatcttgct |
2478570 |
T |
|
| Q |
101 |
ttgttgtgagcattcacgtagtctgctggtgagtcttgtgcttgtgcaacgtgactacccacaatgactattaatcccaaaacaaaccatagagaaaatg |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2478569 |
ttgttgtgagcattcacgtagtctgctggtgagtcttgtgcttgtgcaacgtgactacccacaatgactattaatcccaaaacaaaccatagagaaaatg |
2478470 |
T |
|
| Q |
201 |
aacacattttggttcttagtggtaattactttcggaatgctaaatggttttgttggtgttgtatttatacaaatttttagagatgaaaagattgtaattg |
300 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2478469 |
aacacattttggttcttagtggtaattactttcgtaatgctaaatggttttgttggtgttgtatttatacaaatttttagagatgaaaagattgtaattg |
2478370 |
T |
|
| Q |
301 |
tgacgtaattctcatggaggattagagcaagtatctttggtttaatctaaaaaggaaatatagcgtcatg |
370 |
Q |
| |
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||||||||||||||||| ||||||||||||||||||||||||||||| |||||||||||||||||||||| |
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|
| T |
2478369 |
tgacgtaattctcatggtggattagagcaagtatctttggtttaatccaaaaaggaaatatagcgtcatg |
2478300 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 157; E-Value: 2e-83
Query Start/End: Original strand, 1 - 217
Target Start/End: Complemental strand, 2483173 - 2482957
Alignment:
| Q |
1 |
atccttgcgttgattagcatagttctgtgcataagcagcaacttcgttgtcccaaacaatgtttggaattttaatgaatgaatcaactgcagatcttgct |
100 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||| || || ||||||||||| |||||||||||||| |||||||||||||| ||||||||| |
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|
| T |
2483173 |
atccttgcgttgattagcatagttctgtgcataagcagcaatttttttatcccaaacaatttttggaattttaataaatgaatcaactgccgatcttgct |
2483074 |
T |
|
| Q |
101 |
ttgttgtgagcattcacgtagtctgctggtgagtcttgtgcttgtgcaacgtgactacccacaatgactattaatcccaaaacaaaccatagagaaaatg |
200 |
Q |
| |
|
||||||||||| ||||| |||| |||||| ||||||| |||||||||||||||||||||||||||| ||||||||| |||||||||||||||||||||| |
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| T |
2483073 |
ttgttgtgagccttcacatagtttgctggagagtctttggcttgtgcaacgtgactacccacaatgaatattaatcctaaaacaaaccatagagaaaatg |
2482974 |
T |
|
| Q |
201 |
aacacattttggttctt |
217 |
Q |
| |
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||||||||||||||||| |
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| T |
2482973 |
aacacattttggttctt |
2482957 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 105; E-Value: 2e-52
Query Start/End: Original strand, 1 - 157
Target Start/End: Complemental strand, 2474083 - 2473927
Alignment:
| Q |
1 |
atccttgcgttgattagcatagttctgtgcataagcagcaacttcgttgtcccaaacaatgtttggaattttaatgaatgaatcaactgcagatcttgct |
100 |
Q |
| |
|
||||||||||||||||||||| || ||||||||||||||||||| ||||||||||| |||||||||||||||||| || ||||||||| ||||||||| |
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|
| T |
2474083 |
atccttgcgttgattagcataattttgtgcataagcagcaactttgttgtcccaaataatgtttggaattttaatatttgtatcaactgccgatcttgct |
2473984 |
T |
|
| Q |
101 |
ttgttgtgagcattcacgtagtctgctggtgagtcttgtgcttgtgcaacgtgacta |
157 |
Q |
| |
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| |||||| ||||||||||||||||||||||||||||| || ||||||||||||||| |
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|
| T |
2473983 |
tggttgtgggcattcacgtagtctgctggtgagtcttgggcatgtgcaacgtgacta |
2473927 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 97; E-Value: 1e-47
Query Start/End: Original strand, 1 - 209
Target Start/End: Complemental strand, 2469806 - 2469598
Alignment:
| Q |
1 |
atccttgcgttgattagcatagttctgtgcataagcagcaacttcgttgtcccaaacaatgtttggaattttaatgaatgaatcaactgcagatcttgct |
100 |
Q |
| |
|
|||||||||||||||||||||||| | |||| |||||||||||| ||||||||||||||| ||||||||||||| | || || ||| || |||||||| |
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| T |
2469806 |
atccttgcgttgattagcatagttttttgcaaaagcagcaactttgttgtcccaaacaatatttggaattttaacgtttgtatgaaccgctgatcttgca |
2469707 |
T |
|
| Q |
101 |
ttgttgtgagcattcacgtagtctgctggtgagtcttgtgcttgtgcaacgtgactacccacaatgactattaatcccaaaacaaaccatagagaaaatg |
200 |
Q |
| |
|
|| ||||| || |||||||||||||||||||||||||| || ||||||||||||||||||| ||||| | |||| || || | ||| |||||||||||| |
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|
| T |
2469706 |
ttattgtgggcgttcacgtagtctgctggtgagtcttgggcatgtgcaacgtgactacccataatgagtgttaaacctaacaggaacaatagagaaaatg |
2469607 |
T |
|
| Q |
201 |
aacacattt |
209 |
Q |
| |
|
||| ||||| |
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|
| T |
2469606 |
aacccattt |
2469598 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #5
Raw Score: 78; E-Value: 3e-36
Query Start/End: Original strand, 1 - 246
Target Start/End: Complemental strand, 2470833 - 2470594
Alignment:
| Q |
1 |
atccttgcgttgattagcatagttctgtgcataagcagcaacttcgttgtcccaaacaatgtttggaattttaatgaatg--aatcaactgcagatcttg |
98 |
Q |
| |
|
||||||||||| ||||||||||||||||||| |||||||||||| | ||||||||||| |||||||||||| | || ||||| || |||||| |
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|
| T |
2470833 |
atccttgcgtttattagcatagttctgtgcaaaagcagcaactttttcatcccaaacaatatttggaattttagc-actggtaatca----caaatcttg |
2470739 |
T |
|
| Q |
99 |
ctttgttgtgagcattcacgtagtctgctggtgagtcttgtgcttgtgcaacgtgactacccacaatgactattaatcccaaaacaaaccatagagaaaa |
198 |
Q |
| |
|
|| ||||| || ||||| |||||||||||||||||||| | | |||||| ||||| |||||||||| |||||||||||||||| || ||||||||| |
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| T |
2470738 |
ctgcattgtgggcgttcacatagtctgctggtgagtcttgggatattgcaacttgactgcccacaatgagtattaatcccaaaacacacaatagagaaag |
2470639 |
T |
|
| Q |
199 |
tgaacacattttggttcttagtggtaattactttcggaatgctaaatg |
246 |
Q |
| |
|
||||| |||||||||||||| ||||||| |||| |||||||||||| |
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| T |
2470638 |
tgaacccattttggttctta---gtaattaatttcagaatgctaaatg |
2470594 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #6
Raw Score: 77; E-Value: 1e-35
Query Start/End: Original strand, 1 - 167
Target Start/End: Complemental strand, 2486339 - 2486176
Alignment:
| Q |
1 |
atccttgcgttgattagcatagttctgtgcataagcagcaacttcgttgtcccaaacaatgtttggaattttaatgaatgaatcaactgcagatcttgct |
100 |
Q |
| |
|
||||||||||||||||||||||||||||||| | ||||||| ||||| ||||||||||||||||||||||||||| | || || ||||||||| |
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|
| T |
2486339 |
atccttgcgttgattagcatagttctgtgcaaatgcagcaatatcgttatcccaaacaatgtttggaattttaatg---gtggtaatggctgatcttgct |
2486243 |
T |
|
| Q |
101 |
ttgttgtgagcattcacgtagtctgctggtgagtcttgtgcttgtgcaacgtgactacccacaatga |
167 |
Q |
| |
|
|||||||| || |||||||||||||| ||||||||||| || || |||||||||||||||| ||||| |
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|
| T |
2486242 |
ttgttgtgggcgttcacgtagtctgccggtgagtcttgggcatgagcaacgtgactacccataatga |
2486176 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #7
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 296 - 345
Target Start/End: Complemental strand, 2482799 - 2482750
Alignment:
| Q |
296 |
aattgtgacgtaattctcatggaggattagagcaagtatctttggtttaa |
345 |
Q |
| |
|
|||||||||||||||||||||| |||||||||||||||||||| |||||| |
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| T |
2482799 |
aattgtgacgtaattctcatggtggattagagcaagtatctttagtttaa |
2482750 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #8
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 90 - 155
Target Start/End: Complemental strand, 2466407 - 2466342
Alignment:
| Q |
90 |
cagatcttgctttgttgtgagcattcacgtagtctgctggtgagtcttgtgcttgtgcaacgtgac |
155 |
Q |
| |
|
|||||||||||| ||||||||| ||||| ||||||||| |||||||||| || |||||||| |||| |
|
|
| T |
2466407 |
cagatcttgcttcgttgtgagcgttcacatagtctgcttgtgagtcttgggcatgtgcaacatgac |
2466342 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #9
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 303 - 343
Target Start/End: Complemental strand, 2485944 - 2485904
Alignment:
| Q |
303 |
acgtaattctcatggaggattagagcaagtatctttggttt |
343 |
Q |
| |
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||||||||||||||| ||||||| | ||||||||||||||| |
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|
| T |
2485944 |
acgtaattctcatggtggattagggtaagtatctttggttt |
2485904 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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