View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19473_low_11 (Length: 354)
Name: NF19473_low_11
Description: NF19473
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19473_low_11 |
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| [»] scaffold0941 (1 HSPs) |
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| [»] scaffold0098 (2 HSPs) |
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Alignment Details
Target: scaffold0941 (Bit Score: 323; Significance: 0; HSPs: 1)
Name: scaffold0941
Description:
Target: scaffold0941; HSP #1
Raw Score: 323; E-Value: 0
Query Start/End: Original strand, 11 - 341
Target Start/End: Original strand, 1585 - 1915
Alignment:
| Q |
11 |
taattctcctacaaaattagctcttaaaaaactattatctaaatataaacctgatgtttgtttcatttctgaaccttggatgcttgtgtctgatttgtca |
110 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
1585 |
taattctcctacaaaattagctcttaaaaaactattatctaaatataaacctgatgtttgtttcatttctgaaccttggatgcttgtgtctgatttgtca |
1684 |
T |
|
| Q |
111 |
cctagatggcttcttaatctaggtcttaaagtgttttgtgttaatgatagaaactctttaatccctaatctctggtgtttatgtccaattcatctttccc |
210 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |
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| T |
1685 |
cctagatggcttcttaatctaggtcttaaagtgttttgtgttaatgatagaaactctttaatccctaatctctggtgtttatgttcaattcatctttccc |
1784 |
T |
|
| Q |
211 |
caaacttaattagtgttgatgatcaacaaatttcaattcaaattgatattagtggtaagccttttggtttcactggtgtatatgcttccacttgttatat |
310 |
Q |
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| T |
1785 |
caaacttaattagtgttgatgatcaacaaatttcaattcaaattgatattagtggtaagccttttggtttcactggtgtatatgcttccacttgttatat |
1884 |
T |
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| Q |
311 |
taagagaagacagttgtggtcagccatttct |
341 |
Q |
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| T |
1885 |
taagagaagacagttgtggtcagcgatttct |
1915 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0098 (Bit Score: 187; Significance: 1e-101; HSPs: 2)
Name: scaffold0098
Description:
Target: scaffold0098; HSP #1
Raw Score: 187; E-Value: 1e-101
Query Start/End: Original strand, 114 - 340
Target Start/End: Complemental strand, 33533 - 33307
Alignment:
| Q |
114 |
agatggcttcttaatctaggtcttaaagtgttttgtgttaatgatagaaactctttaatccctaatctctggtgtttatgtccaattcatctttccccaa |
213 |
Q |
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| T |
33533 |
agatggctttataatctaggtctcaaagtgttttgtgttaatgatagaaactctttaatccctaatctctggtgtctatgttcaattaatctttccccga |
33434 |
T |
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| Q |
214 |
acttaattagtgttgatgatcaacaaatttcaattcaaattgatattagtggtaagccttttggtttcactggtgtatatgcttccacttgttatattaa |
313 |
Q |
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||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |
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| T |
33433 |
acttaattagtgttgatgatcaataaatttcaattcaaattgatattagtggtaagccttttagtttcactggtgtatatgcttccacttgttatattaa |
33334 |
T |
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| Q |
314 |
gagaagacagttgtggtcagccatttc |
340 |
Q |
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| T |
33333 |
gagaagacagttgtggtcatccatttc |
33307 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0098; HSP #2
Raw Score: 93; E-Value: 3e-45
Query Start/End: Original strand, 11 - 119
Target Start/End: Complemental strand, 36533 - 36425
Alignment:
| Q |
11 |
taattctcctacaaaattagctcttaaaaaactattatctaaatataaacctgatgtttgtttcatttctgaaccttggatgcttgtgtctgatttgtca |
110 |
Q |
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|||||||||||||||||||||||||||||||||||||| || |||||||||||||||||||||||||| |||||| |||||||||||||||||||||||| |
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| T |
36533 |
taattctcctacaaaattagctcttaaaaaactattatttacatataaacctgatgtttgtttcatttatgaaccctggatgcttgtgtctgatttgtca |
36434 |
T |
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| Q |
111 |
cctagatgg |
119 |
Q |
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||||||||| |
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| T |
36433 |
cctagatgg |
36425 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 100; Significance: 2e-49; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 100; E-Value: 2e-49
Query Start/End: Original strand, 11 - 322
Target Start/End: Complemental strand, 15090889 - 15090578
Alignment:
| Q |
11 |
taattctcctacaaaattagctcttaaaaaactattatctaaatataaacctgatgtttgtttcatttctgaaccttggatgcttgtgtctgatttgtca |
110 |
Q |
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|||||| ||||| |||||||||||||||||| ||||||||||||| ||||| ||| |||| || || |||||||| |||||||| |||||| || | || |
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| T |
15090889 |
taattcacctacgaaattagctcttaaaaaattattatctaaatacaaaccagatatttgctttatatctgaaccctggatgctggtgtctaatctatct |
15090790 |
T |
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| Q |
111 |
cctagatggcttcttaatctaggtcttaaagtgttttgtgttaatgatagaaactctttaatccctaatctctggtgtttatgtccaattcatctttccc |
210 |
Q |
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|||||||||||| ||||||||||| | |||||||||||| | |||| || ||||| || |||||||| |||||| | ||| | |||||| |||||| |
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| T |
15090789 |
tctagatggcttcaaaatctaggtctcagagtgttttgtgtcaccaataggaattctttgattcctaatctttggtgtctgtgttccattcatatttccc |
15090690 |
T |
|
| Q |
211 |
caaacttaattagtgttgatgatcaacaaatttcaattcaaattgatattagtggtaagccttttggtttcactggtgtatatgcttccacttgttatat |
310 |
Q |
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| | | |||||| ||||||| || ||||| || || ||||| ||||||| |||||||| ||||||||| |||||||| ||||||||||| |||||| | |
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| T |
15090689 |
ccactctcattagtcttgatgaccagcaaatctctatccaaatagatattaatggtaagctttttggttttactggtgtgtatgcttccacatgttatgt |
15090590 |
T |
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| Q |
311 |
taagagaagaca |
322 |
Q |
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| T |
15090589 |
caagagaagaca |
15090578 |
T |
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