View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19473_low_12 (Length: 350)
Name: NF19473_low_12
Description: NF19473
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19473_low_12 |
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Alignment Details
Target: chr3 (Bit Score: 331; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 331; E-Value: 0
Query Start/End: Original strand, 1 - 343
Target Start/End: Original strand, 32416014 - 32416356
Alignment:
| Q |
1 |
gcaatatataagtaggggtgttcgaactcaaattctcaacttattcgcggaagcagccacaaaacaactcaacataaaacattaaaataaacatggaata |
100 |
Q |
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| T |
32416014 |
gcaatatataagtaggggtgttcaaactcaaattctcaacttattcacggaagcagccacaaaacaactcaacataaaacattaaaataaacatggaata |
32416113 |
T |
|
| Q |
101 |
aagaaagtccttaaccatgtttgaaattaatgtgttatgatttatgaatgaacaggccgaattaaaatcattcgtatcatttcaagtctttttattgatt |
200 |
Q |
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| T |
32416114 |
aagaaagtccttaaccatgtttgaaattaatgtgttatgatttatgaatgaacaggccgaattaaaatcatttgtatcatttcaagtctttttattgatt |
32416213 |
T |
|
| Q |
201 |
attccattataaaaaatgacatttgagaattaagagaacaagaaaaaagaaaagtaaatgggagataacatgtttacaaattaaccagagaccaacatta |
300 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
32416214 |
attccattataaaaaatgacatttgagaattaagagaacaagaaaaaagaaaagtaaatgggagataacatgtttacaaattaaccagagaccaacatta |
32416313 |
T |
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| Q |
301 |
aacgaatagctttggtgagaacaatgaatgaattatattattc |
343 |
Q |
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||||||||||||||||||||||||||||||||||||||||||| |
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| T |
32416314 |
aacgaatagctttggtgagaacaatgaatgaattatattattc |
32416356 |
T |
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