View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19473_low_15 (Length: 314)
Name: NF19473_low_15
Description: NF19473
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19473_low_15 |
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Alignment Details
Target: chr1 (Bit Score: 292; Significance: 1e-164; HSPs: 4)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 292; E-Value: 1e-164
Query Start/End: Original strand, 1 - 308
Target Start/End: Complemental strand, 8243888 - 8243581
Alignment:
| Q |
1 |
tgtacctggtagaaatttaaagctgagttgaccaaaaggtcagagtatgtaggaaagtcatattgtgcttgtcttagatgagacaagtagtacgtgttag |
100 |
Q |
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| T |
8243888 |
tgtacctggtagaaatttaaagctgagttgaccaaaaggtcagagtatgtaggaaagtcatattgtgcttgtcttagatgagacaagtagtacgtgttag |
8243789 |
T |
|
| Q |
101 |
aaatgtcattgcttcctagtaccacaagaaaaagactattggctaagatgaaatttgctctatcttcaccaactagtcctttaagcctcacaatgtaatc |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |
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| T |
8243788 |
aaatgtcattgcttcctagtaccacaagaaaaagactattggctaagatgaaatttgctctatcttcaccaaatagtcctttaagcctcacaatgtaatc |
8243689 |
T |
|
| Q |
201 |
tttgaataagtctagctggccagacatagatatagctacctgttatattaatatacaagaaataccaaatatcaaacttcataattttttgttcttaata |
300 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| | |
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| T |
8243688 |
tttgaataagtctagctggccagacatagatatagctacctgttatattaatatacatgaaataccaaatatcaaacttcataattttttgttcttaaca |
8243589 |
T |
|
| Q |
301 |
ttcttgga |
308 |
Q |
| |
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| T |
8243588 |
tttttgga |
8243581 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 96; E-Value: 4e-47
Query Start/End: Original strand, 3 - 242
Target Start/End: Complemental strand, 8253524 - 8253285
Alignment:
| Q |
3 |
tacctggtagaaatttaaagctgagttgaccaaaaggtcagagtatgtaggaaagtcatattgtgcttgtcttagatgagacaagtagtacgtgttagaa |
102 |
Q |
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||||| ||||||||| ||||||||| || |||||||||||||||| |||||| ||||| | ||||||| |||| ||||| |||| ||||||||| |
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| T |
8253524 |
taccttgtagaaattataagctgagtctactaaaaggtcagagtatgaaggaaaatcataattaacttgtctcgcatgaaacaagaagtatgtgttagaa |
8253425 |
T |
|
| Q |
103 |
atgtcattgcttcctagtaccacaagaaaaagactattggctaagatgaaatttgctctatcttcaccaactagtcctttaagcctcacaatgtaatctt |
202 |
Q |
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|| ||||||||||||| || ||||| | ||| |||||||||||||||||| |||| ||||||||||||||||| |||||| ||| ||||||| || |||| |
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| T |
8253424 |
atatcattgcttcctactagcacaaaataaatactattggctaagatgaagtttgttctatcttcaccaactattcctttcagcttcacaatatattctt |
8253325 |
T |
|
| Q |
203 |
tgaataagtctagctggccagacatagatatagctacctg |
242 |
Q |
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||||||| |||| |||| ||||||| ||||||||| |||| |
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| T |
8253324 |
tgaataattctatctgggcagacattgatatagctgcctg |
8253285 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 79 - 173
Target Start/End: Complemental strand, 8233118 - 8233024
Alignment:
| Q |
79 |
tgagacaagtagtacgtgttagaaatgtcattgcttcctagtaccacaagaaaaagactattggctaagatgaaatttgctctatcttcaccaac |
173 |
Q |
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| T |
8233118 |
tgagacaagaaatatgtgttggaaatatcattactgcccaataccacaaggaaaagactatttgccaagatgaagtttgttctgtcttctccaac |
8233024 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 130 - 220
Target Start/End: Complemental strand, 8271276 - 8271186
Alignment:
| Q |
130 |
aaaagactattggctaagatgaaatttgctctatcttcaccaactagtcctttaagcctcacaatgtaatctttgaataagtctagctggc |
220 |
Q |
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|||| ||||||||||| |||||| |||| ||||| || ||||| ||| | |||||| || |||| || ||||||||| |||||||||||| |
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| T |
8271276 |
aaaacactattggctatgatgaactttgttctattctctccaacgagtgcattaagcttcccaatatattctttgaatgagtctagctggc |
8271186 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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