View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19473_low_17 (Length: 268)
Name: NF19473_low_17
Description: NF19473
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19473_low_17 |
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Alignment Details
Target: chr2 (Bit Score: 210; Significance: 1e-115; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 210; E-Value: 1e-115
Query Start/End: Original strand, 18 - 260
Target Start/End: Complemental strand, 37536789 - 37536545
Alignment:
| Q |
18 |
atcttatatagaaaaaacagcaacaatataaaaatggagacgaaactgttattatttattctagcaacactctct--ctaacacttattttttcactgaa |
115 |
Q |
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| T |
37536789 |
atcttatatagaaaaaacagcaacaatataaaaatggagacgaaactgttattatttattctagcaacactctctttctaacacttatttttttactgaa |
37536690 |
T |
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| Q |
116 |
tgaaattaatgtggatcataaactttggaaatgaatctcgcttaaagtgatgtgtgatccacattgatttcatccgccatccgatgaaagattgagtgtt |
215 |
Q |
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| T |
37536689 |
tgaaattaatgtggatcataaactttggaaatgaatctcgcttaaagtgatgtgtaatccacattgatttcatccgtcatccggtgaaagattgagtgtt |
37536590 |
T |
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| Q |
216 |
aaaagatattaaaaagtgagtttatatccatggttttatattctt |
260 |
Q |
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||||||||||||||||||| |||||||||| |||||||||||||| |
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| T |
37536589 |
aaaagatattaaaaagtgaatttatatccacggttttatattctt |
37536545 |
T |
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