View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19473_low_19 (Length: 247)
Name: NF19473_low_19
Description: NF19473
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19473_low_19 |
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| [»] chr1 (1 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 200; Significance: 1e-109; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 200; E-Value: 1e-109
Query Start/End: Original strand, 11 - 247
Target Start/End: Complemental strand, 29787352 - 29787104
Alignment:
| Q |
11 |
atcatcatttaaagggaaagttgcaagtttcttattttcaatgagtaaaaagtcaaccaagaaaaaatctagttcatctcattcgaatgatgaat----- |
105 |
Q |
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| T |
29787352 |
atcatcatttaaagggaaagttgcaagtttcttattttcaatgagtaaaaagtcaaccaagaaaaaatctagttcatctcattcgaatgatgaatctgaa |
29787253 |
T |
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| Q |
106 |
-------tcaccgaaacatcagttccatcagtaaattcatctggattcctcggagataatgtgtctcaaagcttcactgttggtggatttgaagagtctc |
198 |
Q |
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| T |
29787252 |
actattgtcaacgaaacatcagttccatcagtaaattcatctggattcctcggagataatgtgtctcaaagcttcaatgttggtggatttgaagagtctc |
29787153 |
T |
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| Q |
199 |
ttgcagctttatgtgaatcagtctctagtgaaccacaagaagacatgat |
247 |
Q |
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| T |
29787152 |
ttgcagctttatgtgaatcagtctctagtgaaccacaagaagacatgat |
29787104 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 34; Significance: 0.0000000003; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 11 - 80
Target Start/End: Original strand, 39873455 - 39873524
Alignment:
| Q |
11 |
atcatcatttaaagggaaagttgcaagtttcttattttcaatgagtaaaaagtcaaccaagaaaaaatct |
80 |
Q |
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| T |
39873455 |
atcatcatttaaagggaaagttgcgagtttcttattctcaaggaataagaaatcaatcagggaaaaatct |
39873524 |
T |
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