View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19473_low_3 (Length: 548)
Name: NF19473_low_3
Description: NF19473
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19473_low_3 |
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| [»] chr5 (7 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 527; Significance: 0; HSPs: 7)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 527; E-Value: 0
Query Start/End: Original strand, 14 - 548
Target Start/End: Original strand, 11902887 - 11903421
Alignment:
| Q |
14 |
tcatcaacattgctacggtcacaatcgcaagagggactccaccacaatccttcacgagttcccattcgatgttgtcttgtttgttgttggttgaagttga |
113 |
Q |
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| T |
11902887 |
tcatcaacattgctacggtcacaatcgcaagagggactccaccacaatccttcacgagttcccattcgatgttgtcttgtttgttgttggttgaggttga |
11902986 |
T |
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| Q |
114 |
agttggcccacgaatttgttggaataacaattgagattcatgtctgttaagccctttcaaaacatacctggcaacagaaatattatcggcgacatagttg |
213 |
Q |
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| T |
11902987 |
agtttgcccacgaatttgttggaataacaattgagattcatgtctgttaagccctttcaaaacatacctggcaacagaaatattatcggcgacatagttg |
11903086 |
T |
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| Q |
214 |
ctacgtgtagtgatgagtattgcccaactggtaccgccagattcagttaatttcttttgcaacttttcaagatcatgcttaatctcaattcgcaaatcat |
313 |
Q |
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| T |
11903087 |
ctacgtgtagtgatgagtattgcccaactggtaccgccagattcagttaatttcttttgcaacttttcaagatcatgcttaatctcaattcgcaaatcat |
11903186 |
T |
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| Q |
314 |
cgagcacaagtaggcggcgtacacttccatcaatgactgtggtcatagctaagttagcaatgtattccacatcaaaggtttcatggagagaacggatcca |
413 |
Q |
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| T |
11903187 |
cgagcacaagtaggcggcgtacacttccatcaatgactgtggtcatagctaagttagcaatgtattccacatcaaaggtttcatggagagaacggatcca |
11903286 |
T |
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| Q |
414 |
aattggttcgaaaccaaaatgagctttgacttgttcatcttcgcaaacaagacttgcaagttttgttttcccaattccaggaacaccaacaatgacaata |
513 |
Q |
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| T |
11903287 |
aattggttcgaaaccaaaatgagctttgacttgttcatcttcgcaaacaagacttgcaagttttgttttcccaattccaggaacaccaacaatgacaata |
11903386 |
T |
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| Q |
514 |
acaggaacgaaatcatcagcagggttgttcaactt |
548 |
Q |
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| T |
11903387 |
acaggaacgaaatcatcagcagggttgttcaactt |
11903421 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 69; E-Value: 1e-30
Query Start/End: Original strand, 210 - 516
Target Start/End: Complemental strand, 11731119 - 11730816
Alignment:
| Q |
210 |
gttgctacgtgtagtgatgagtattgcccaactggtaccgccagattcagttaatttcttttgcaacttttcaagatcatgcttaatctcaattcgcaaa |
309 |
Q |
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||||||||||||||||||||||||||| |||| |||||| | ||| || ||||| | |||||||| || ||||||| |||||||||| ||| |||| |
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| T |
11731119 |
gttgctacgtgtagtgatgagtattgcacaaccggtaccacaagactcctttaatcgttgctgcaacttctcgagatcattcttaatctcatttctcaaa |
11731020 |
T |
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| Q |
310 |
tcatcgagcacaagtaggcggcgtacacttccatcaatgactgtggtcatagctaagttagcaatgtattccacatcaaaggtttcatggagagaacgga |
409 |
Q |
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| T |
11731019 |
tcatcaagcacgattaggcagtgtttaccatcatcaa---cagtggtggtagctgacttaactatggattccacatcaaaggtctcgtgtagaagatcga |
11730923 |
T |
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| Q |
410 |
tccaaattggttcgaaaccaaaatgagctttgacttgttcatcttcgcaaacaagacttgcaagttttgttttcccaattccaggaacaccaacaatgac |
509 |
Q |
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| T |
11730922 |
tccaaattggttgtagcccaaaatttgctttgacttgctcatcctcgcaaacaagccgtgcaagttttgtcttccctattcccggaacaccaacaatgac |
11730823 |
T |
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| Q |
510 |
aataaca |
516 |
Q |
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| T |
11730822 |
aaaaaca |
11730816 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 408 - 506
Target Start/End: Complemental strand, 11859234 - 11859136
Alignment:
| Q |
408 |
gatccaaattggttcgaaaccaaaatgagctttgacttgttcatcttcgcaaacaagacttgcaagttttgttttcccaattccaggaacaccaacaat |
506 |
Q |
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| T |
11859234 |
gatccaaattgcttggaaaccagaactccctttgacttgctcatcttcacaaacgagacgagcaagttttgttttgccaattccaggaacaccaacaat |
11859136 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 427 - 516
Target Start/End: Complemental strand, 11730461 - 11730372
Alignment:
| Q |
427 |
ccaaaatgagctttgacttgttcatcttcgcaaacaagacttgcaagttttgttttcccaattccaggaacaccaacaatgacaataaca |
516 |
Q |
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| T |
11730461 |
ccaaaatttgctttgacttgctcatccttgcaaacaagacgtgcaagttttgtctttcctattcctgaaacaccaacaatgacaaaaaca |
11730372 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 408 - 516
Target Start/End: Complemental strand, 12038032 - 12037924
Alignment:
| Q |
408 |
gatccaaattggttcgaaaccaaaatgagctttgacttgttcatcttcgcaaacaagacttgcaagttttgttttcccaattccaggaacaccaacaatg |
507 |
Q |
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| T |
12038032 |
gatccaaattggttgtaacccaaaattcatttcgacttgctcatcctcacaaacgagatgagcaagttttgttttgccaattccaggaacaccaacaata |
12037933 |
T |
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| Q |
508 |
acaataaca |
516 |
Q |
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||||||||| |
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| T |
12037932 |
acaataaca |
12037924 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #6
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 413 - 506
Target Start/End: Complemental strand, 11827061 - 11826968
Alignment:
| Q |
413 |
aaattggttcgaaaccaaaatgagctttgacttgttcatcttcgcaaacaagacttgcaagttttgttttcccaattccaggaacaccaacaat |
506 |
Q |
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| T |
11827061 |
aaatttgttcgaattcaaaattcgctttgacttgctcgtcctcacaaacgagatgagcaagttttgttttcccaattccagtaacaccaacaat |
11826968 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #7
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 37 - 115
Target Start/End: Complemental strand, 11731301 - 11731226
Alignment:
| Q |
37 |
atcgcaagagggactccaccacaatccttcacgagttcccattcgatgttgtcttgtttgttgttggttgaagttgaag |
115 |
Q |
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||||||||||| ||||| |||||||||||||| | ||| || || ||||||||||||||||||||||||||||||| |
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| T |
11731301 |
atcgcaagaggcactcccccacaatccttcacaatctccaatccg---ttgtcttgtttgttgttggttgaagttgaag |
11731226 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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