View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF19473_low_7 (Length: 451)

Name: NF19473_low_7
Description: NF19473
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF19473_low_7
NF19473_low_7
[»] chr3 (3 HSPs)
chr3 (177-289)||(36153810-36153922)
chr3 (373-435)||(3523823-3523885)
chr3 (371-430)||(36153669-36153728)
[»] chr8 (3 HSPs)
chr8 (180-289)||(16797061-16797170)
chr8 (180-289)||(18207524-18207633)
chr8 (371-432)||(16796934-16796995)
[»] chr1 (2 HSPs)
chr1 (180-289)||(47722823-47722932)
chr1 (180-289)||(47729815-47729924)
[»] chr7 (1 HSPs)
chr7 (180-289)||(18001032-18001141)
[»] chr6 (1 HSPs)
chr6 (180-301)||(2269804-2269926)
[»] chr5 (2 HSPs)
chr5 (4-76)||(22919619-22919691)
chr5 (371-403)||(34453477-34453509)
[»] chr4 (1 HSPs)
chr4 (180-272)||(13103055-13103147)


Alignment Details
Target: chr3 (Bit Score: 65; Significance: 2e-28; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 177 - 289
Target Start/End: Complemental strand, 36153922 - 36153810
Alignment:
Q  177 actcacatattcaacgtcgatctcaaccatatatgtcctatatttcaggtgtagctcgttgatcctcctatccatttcaataactgggttgggatccaaa 276  Q
    ||||||||||||||||| ||| |||||||| ||||||||||| |||||| ||||||||||||||||||||||||||||| | ||||| |||||||| |      
T  36153922 actcacatattcaacgttgatttcaaccatgtatgtcctatacttcaggcgtagctcgttgatcctcctatccatttcagtcactggattgggatcaagt 36153823  T
Q  277 ggtgctgcaaaaa 289  Q
    ||| |||||||||    
T  36153822 ggttctgcaaaaa 36153810  T

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Target: chr3; HSP #2
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 373 - 435
Target Start/End: Original strand, 3523823 - 3523885
Alignment:
Q  373 acataccaatcaacatgttataagagagcatggatcggatgttatggtggaaaaccatgtttg 435  Q
    ||||||||||||||||||||||||||||||||||| ||||||||||||||||| |||||||||    
T  3523823 acataccaatcaacatgttataagagagcatggatgggatgttatggtggaaagccatgtttg 3523885  T

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Target: chr3; HSP #3
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 371 - 430
Target Start/End: Complemental strand, 36153728 - 36153669
Alignment:
Q  371 atacataccaatcaacatgttataagagagcatggatcggatgttatggtggaaaaccat 430  Q
    ||||||||||||||||||||| ||||||||||| |   ||||||||||||||||| ||||    
T  36153728 atacataccaatcaacatgttgtaagagagcatcgcctggatgttatggtggaaagccat 36153669  T

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Target: chr8 (Bit Score: 54; Significance: 8e-22; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 54; E-Value: 8e-22
Query Start/End: Original strand, 180 - 289
Target Start/End: Complemental strand, 16797170 - 16797061
Alignment:
Q  180 cacatattcaacgtcgatctcaaccatatatgtcctatatttcaggtgtagctcgttgatcctcctatccatttcaataactgggttgggatccaaaggt 279  Q
    ||||||||||||||| |  |||||||| ||||||||||| || ||| ||||||||||||||||||||||||||||  | ||||| |||||||| |  |||    
T  16797170 cacatattcaacgtcaacttcaaccatgtatgtcctatacttaaggcgtagctcgttgatcctcctatccatttcggtcactggattgggatcaagtggt 16797071  T
Q  280 gctgcaaaaa 289  Q
    ||||||||||    
T  16797070 gctgcaaaaa 16797061  T

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Target: chr8; HSP #2
Raw Score: 54; E-Value: 8e-22
Query Start/End: Original strand, 180 - 289
Target Start/End: Complemental strand, 18207633 - 18207524
Alignment:
Q  180 cacatattcaacgtcgatctcaaccatatatgtcctatatttcaggtgtagctcgttgatcctcctatccatttcaataactgggttgggatccaaaggt 279  Q
    ||||||||||||||| |  |||||||| ||||||||||| || ||| ||||||||||||||||||||||||||||  | ||||| |||||||| |  |||    
T  18207633 cacatattcaacgtcaacttcaaccatgtatgtcctatacttaaggcgtagctcgttgatcctcctatccatttcggtcactggattgggatcaagtggt 18207534  T
Q  280 gctgcaaaaa 289  Q
    ||||||||||    
T  18207533 gctgcaaaaa 18207524  T

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Target: chr8; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 371 - 432
Target Start/End: Complemental strand, 16796995 - 16796934
Alignment:
Q  371 atacataccaatcaacatgttataagagagcatggatcggatgttatggtggaaaaccatgt 432  Q
    ||||||||||||||||||||| ||||||||||| |    | |||||||||||||| ||||||    
T  16796995 atacataccaatcaacatgttgtaagagagcatcgccacgttgttatggtggaaagccatgt 16796934  T

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Target: chr1 (Bit Score: 54; Significance: 8e-22; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 54; E-Value: 8e-22
Query Start/End: Original strand, 180 - 289
Target Start/End: Complemental strand, 47722932 - 47722823
Alignment:
Q  180 cacatattcaacgtcgatctcaaccatatatgtcctatatttcaggtgtagctcgttgatcctcctatccatttcaataactgggttgggatccaaaggt 279  Q
    |||||| |||||||| |  |||||||| ||||||||||| || ||| ||||||||||||||||||||||||||||| | ||||| |||||||| |  |||    
T  47722932 cacatagtcaacgtcaacttcaaccatgtatgtcctatacttaaggcgtagctcgttgatcctcctatccatttcagtcactggattgggatcaagtggt 47722833  T
Q  280 gctgcaaaaa 289  Q
    ||||||||||    
T  47722832 gctgcaaaaa 47722823  T

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Target: chr1; HSP #2
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 180 - 289
Target Start/End: Complemental strand, 47729924 - 47729815
Alignment:
Q  180 cacatattcaacgtcgatctcaaccatatatgtcctatatttcaggtgtagctcgttgatcctcctatccatttcaataactgggttgggatccaaaggt 279  Q
    |||||| |||||||| |  |||||||| ||||||||||| || ||| ||||||||||||||||||||||||||||  | ||||| |||||||| |  |||    
T  47729924 cacatagtcaacgtcaacttcaaccatgtatgtcctatacttaaggcgtagctcgttgatcctcctatccatttctgtcactggattgggatcaagtggt 47729825  T
Q  280 gctgcaaaaa 289  Q
    ||||||||||    
T  47729824 gctgcaaaaa 47729815  T

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Target: chr7 (Bit Score: 50; Significance: 2e-19; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 180 - 289
Target Start/End: Complemental strand, 18001141 - 18001032
Alignment:
Q  180 cacatattcaacgtcgatctcaaccatatatgtcctatatttcaggtgtagctcgttgatcctcctatccatttcaataactgggttgggatccaaaggt 279  Q
    ||||||||||||||| |  |||||||| ||||||||||| || ||| ||||||||||||||||||||||| ||||  | ||||| |||||||| |  |||    
T  18001141 cacatattcaacgtcaacttcaaccatgtatgtcctatacttaaggcgtagctcgttgatcctcctatccttttctgtcactggattgggatcaagtggt 18001042  T
Q  280 gctgcaaaaa 289  Q
    ||||||||||    
T  18001041 gctgcaaaaa 18001032  T

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Target: chr6 (Bit Score: 47; Significance: 1e-17; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 180 - 301
Target Start/End: Original strand, 2269804 - 2269926
Alignment:
Q  180 cacatattcaacgtcgatctcaaccatatatgtcctatatttcaggtgtagctcgttgatcctcctatccatttcaataactgggttgggatccaaaggt 279  Q
    ||||||||||||||| |  ||| |||| ||||||||||| || ||| |||||||||||||| |||||||||||||  | ||||| |||||||| |  |||    
T  2269804 cacatattcaacgtcaacttcagccatgtatgtcctatacttaaggcgtagctcgttgatcttcctatccatttcggtcactggattgggatcaagtggt 2269903  T
Q  280 gctgc-aaaaatgacacaacaaa 301  Q
    ||||| |||||||||||| ||||    
T  2269904 gctgcaaaaaatgacacaccaaa 2269926  T

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Target: chr5 (Bit Score: 45; Significance: 2e-16; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 4 - 76
Target Start/End: Original strand, 22919619 - 22919691
Alignment:
Q  4 agcaaaggcagagggggtgaaatccatcaaataattttcggcagaccttttcccagtaatcttgctgcatggg 76  Q
    |||| ||||||||| ||||||||||||||||  |||||| || ||||||||||||||||||||| ||||||||    
T  22919619 agcagaggcagaggaggtgaaatccatcaaaacattttcagcggaccttttcccagtaatcttgttgcatggg 22919691  T

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Target: chr5; HSP #2
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 371 - 403
Target Start/End: Complemental strand, 34453509 - 34453477
Alignment:
Q  371 atacataccaatcaacatgttataagagagcat 403  Q
    ||||||||||||||||||||| |||||||||||    
T  34453509 atacataccaatcaacatgttgtaagagagcat 34453477  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 37; Significance: 0.00000000001; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 180 - 272
Target Start/End: Original strand, 13103055 - 13103147
Alignment:
Q  180 cacatattcaacgtcgatctcaaccatatatgtcctatatttcaggtgtagctcgttgatcctcctatccatttcaataactgggttgggatc 272  Q
    ||||||||||||||| |  |||||||| ||||||||||| || |||  |  ||||||||||||||||||||||||  | ||||| ||||||||    
T  13103055 cacatattcaacgtcaacttcaaccatgtatgtcctatacttaaggcatgactcgttgatcctcctatccatttcggtcactggattgggatc 13103147  T

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