View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19473_low_8 (Length: 442)
Name: NF19473_low_8
Description: NF19473
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19473_low_8 |
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Alignment Details
Target: chr3 (Bit Score: 130; Significance: 3e-67; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 130; E-Value: 3e-67
Query Start/End: Original strand, 231 - 426
Target Start/End: Complemental strand, 20754392 - 20754199
Alignment:
| Q |
231 |
ttataatatacggtggcttgacattgactatatgtatannnnnnngtaaatttaatatttccactcataactagagtgattgatctctttatatctaata |
330 |
Q |
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| T |
20754392 |
ttataatatacagtagcttgacattgactatatatatatttttt-gtaaatttaatatttccactcatgactagagtaattgatctctt-atattaaata |
20754295 |
T |
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| Q |
331 |
agaccatatagaaggcaaattcttcctcaaaagttttagtacctttacattttcacaactattattcaaacttaaaaccacttattatgttgaaag |
426 |
Q |
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| T |
20754294 |
agaccatatagaaggcaaattcttcctcaaaagttttagtacctttacattttcacaactattattcaaacttaaaaccaattattatgttgaaag |
20754199 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 102; E-Value: 2e-50
Query Start/End: Original strand, 90 - 239
Target Start/End: Complemental strand, 20754725 - 20754577
Alignment:
| Q |
90 |
attgcatacctccaagttttattggaaannnnnnnnagtaataattatgagtttggtctgaaagtaaataaagaatgtttaaagattgtttcatgtaaga |
189 |
Q |
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|||||||||||||||||||||||||||| | |||||||||||||||||||| ||||||||||||||||||| ||||||||||||||||||||| |
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| T |
20754725 |
attgcatacctccaagttttattggaaattttcttaa-taataattatgagtttggtccgaaagtaaataaagaatgtctaaagattgtttcatgtaaga |
20754627 |
T |
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| Q |
190 |
tttgagttcgagtttcccaaacaatttatcatgaagttcatttataatat |
239 |
Q |
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| T |
20754626 |
tttgagttcgagtttcccgaacaatttgtcatgaagttcatttataatat |
20754577 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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