View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF19474_high_5 (Length: 418)

Name: NF19474_high_5
Description: NF19474
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF19474_high_5
NF19474_high_5
[»] chr7 (1 HSPs)
chr7 (18-418)||(12878151-12878554)


Alignment Details
Target: chr7 (Bit Score: 321; Significance: 0; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 321; E-Value: 0
Query Start/End: Original strand, 18 - 418
Target Start/End: Complemental strand, 12878554 - 12878151
Alignment:
Q  18 catgttgcacgtaatacacttttttggaacaatactcttcatcataccttgaagaggtaaggtacgacatcaatagctgctcgagcaagggcaactcgac 117  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  12878554 catgttgcacgtaatacacttttttggaacaatactcttcatcataccttgaagaggtaaggtacgacatcaatagctgctcgagcaagggcaactcgac 12878455  T
Q  118 ctgcaaaggataaccgcttagccttccacgaggacaatgtagcattaacttggtctatgagatactgacactctactt-ttttcagtgctctttctatca 216  Q
    |||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |||||||||| || |||| ||    
T  12878454 ctgcaaaggataactgcttagccttccacgaggacaatgtagcattaacttggtctatgagagactgacactctactttttttcagtgccctatctacca 12878355  T
Q  217 agggaataccgaagtacttccccagattagcaacttccataagtctgatgtaccaactaactgacttctaaccacactactggtatatttagag--nnnn 314  Q
    |||||||||| || |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||          
T  12878354 agggaataccaaaatacttccctagattagcaacttccataagtctgatgtaccaactaactgacttctaaccacactactggtatatttagagaaaaaa 12878255  T
Q  315 nnnngttgcactaaccttttactgttacaaaaactcaacagaatctccatttcacttaacattcgtctcaaaagtagcaatagagaccaagatgaactat 414  Q
        ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| ||||||||||||||||||||||    
T  12878254 aaaagttgcactaaccttttactgttacaaaaactcaacagaatctccatttcacttaacattcgtctcaacagtagtaatagagaccaagatgaactat 12878155  T
Q  415 ataa 418  Q
    ||||    
T  12878154 ataa 12878151  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University