View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19474_low_3 (Length: 764)
Name: NF19474_low_3
Description: NF19474
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19474_low_3 |
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Alignment Details
Target: chr3 (Bit Score: 235; Significance: 1e-129; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 235; E-Value: 1e-129
Query Start/End: Original strand, 406 - 748
Target Start/End: Original strand, 4809630 - 4809970
Alignment:
| Q |
406 |
gtagttcttgtttttgtcttaactttaagagtgggtcttatagtgtaggctttgaagttcggagtaccatactctcaagctataatgtttatatattttt |
505 |
Q |
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| T |
4809630 |
gtagttcttgtttttgtcttaactttaagagtgggtcttatagtgtaggctttgaggttcggagtaccctagtctcaagctttaatgtttatatattttt |
4809729 |
T |
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| Q |
506 |
ggtgtcaatttctacattgagttggttcatatagaattttatactctagctttagttgaatcttatgctttttatttttgaaacggatactgagtttacn |
605 |
Q |
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| T |
4809730 |
ggtgtcaatttctacattgagtcggttcatatagcattt--tactctaactttagttgagtcccatgttttttatttttggatcggatactgagtttata |
4809827 |
T |
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| Q |
606 |
nnnnnntcgcatctattatattgttggtgcaaactcctagcttgcactcagagagagttcaaaacgttttgttatgtgatgagaatatagaggaagagga |
705 |
Q |
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| T |
4809828 |
aaaaaattgcatctattatattgttggtgcaaactcctagcttgcactcagagagagttcagagtgttttgttatgtgatgagaatatagaggaagagga |
4809927 |
T |
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| Q |
706 |
tagttttgtttatggtgaattgtatgtattgcatagtgattat |
748 |
Q |
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| T |
4809928 |
tagttttgtttatggtgaattgtatgtattgcttagtgattat |
4809970 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 175; E-Value: 8e-94
Query Start/End: Original strand, 11 - 252
Target Start/End: Original strand, 4809223 - 4809475
Alignment:
| Q |
11 |
cagagatgcaaggaacaacactagaaatgatagggaaaaagaagccattcttagttactgattttcagtcttggtgtacaaaacatagggagtactactc |
110 |
Q |
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| T |
4809223 |
cagagatgcaaggaacaacactagaaatgatagggaaaaagaagccattcttagttactgattttcagtcttggtgtacaaaacatagggagtactactc |
4809322 |
T |
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| Q |
111 |
atgttttatactggattgttaggaggatcaatgagtgggtggggggttgtgcaattattgattagattacgtcagggctgatgtcacatgcct------- |
203 |
Q |
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| T |
4809323 |
atgttttatactggattgttagggggatcaatgagtgaagggggg---gtgcaattattgattagattacgtcagggctgatgtcatatgcctaaggatt |
4809419 |
T |
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| Q |
204 |
-------accccacaaacctaaccaaactttctaaaagggacatccttcggggtga |
252 |
Q |
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| T |
4809420 |
aacttacaccccacaaacctaaccaaactttctaaaagggacatccttcggggtga |
4809475 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 35; Significance: 0.0000000003; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 655 - 729
Target Start/End: Complemental strand, 4659837 - 4659763
Alignment:
| Q |
655 |
agagagagttcaaaacgttttgttatgtgatgagaatatagaggaagaggatagttttgtttatggtgaattgta |
729 |
Q |
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| T |
4659837 |
agagatagttccaaatgttctgttatgtgatgagaataatgaggatgaatagagttttgtttatggtgaattgta |
4659763 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 35; Significance: 0.0000000003; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 655 - 729
Target Start/End: Complemental strand, 930095 - 930021
Alignment:
| Q |
655 |
agagagagttcaaaacgttttgttatgtgatgagaatatagaggaagaggatagttttgtttatggtgaattgta |
729 |
Q |
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| T |
930095 |
agagagcgttcagaacgttctattatgttatgagaatagagaagatgaagagagttttgtttatggtgaattgta |
930021 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 32; Significance: 0.00000002; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 657 - 724
Target Start/End: Complemental strand, 33829787 - 33829720
Alignment:
| Q |
657 |
agagagttcaaaacgttttgttatgtgatgagaatatagaggaagaggatagttttgtttatggtgaa |
724 |
Q |
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| T |
33829787 |
agagagttcaaaacgttctgaactgtaatgagaatagagaggatgaagagagttttgtttatggtgaa |
33829720 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 31; Significance: 0.00000007; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 656 - 730
Target Start/End: Complemental strand, 22054910 - 22054836
Alignment:
| Q |
656 |
gagagagttcaaaacgttttgttatgtgatgagaatatagaggaagaggatagttttgtttatggtgaattgtat |
730 |
Q |
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| T |
22054910 |
gagagagttcagaacgttcagatctgtgttaagaatagagaggatgaagagagttttgtttatggtgaattgtat |
22054836 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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