View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19474_low_4 (Length: 497)
Name: NF19474_low_4
Description: NF19474
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19474_low_4 |
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Alignment Details
Target: chr7 (Bit Score: 204; Significance: 1e-111; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 204; E-Value: 1e-111
Query Start/End: Original strand, 19 - 296
Target Start/End: Complemental strand, 2400871 - 2400602
Alignment:
| Q |
19 |
atgttatagctaggaacaataattaaagcacttgcactttgaattagaacccattacactaatttagccaactagcttaattaaggatatgtctagtcga |
118 |
Q |
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| T |
2400871 |
atgttatagctaggaacaataattaaagtacttgcactttgaa---gaacccattacactaatttagacaactagcttaattaaggatatgtctagtcga |
2400775 |
T |
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| Q |
119 |
agatcaaggcaacaatcaggtgggtctacacggatttctgatgaccaaattatcgaccttgtttgcaaattgcgtcaacttgttcctgagattcgtaata |
218 |
Q |
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| T |
2400774 |
aggtcaaggcaacaatcaggagggtctactcggatctctgatgaccaaatcatcgaccttgtttgcaaattgcgccaacttgttcctgagattcgtaata |
2400675 |
T |
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| Q |
219 |
ggcaatctgacaaggtactatagctatttcaatcactctatagtatagatacacactattcataaggatgttaaagtt |
296 |
Q |
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| T |
2400674 |
ggcgctctgacaaggtactatagctatttcaatcactct-----atagatacacactattcataaggatgttaaagtt |
2400602 |
T |
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Target: chr6 (Bit Score: 44; Significance: 8e-16; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 44; E-Value: 8e-16
Query Start/End: Original strand, 152 - 235
Target Start/End: Complemental strand, 3400556 - 3400473
Alignment:
| Q |
152 |
atttctgatgaccaaattatcgaccttgtttgcaaattgcgtcaacttgttcctgagattcgtaataggcaatctgacaaggta |
235 |
Q |
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| T |
3400556 |
atttctgatgatcaaatcatcgaacttgtttccaagttacgtcaacttgttcctgagattcgtcataggcgttcagacaaggta |
3400473 |
T |
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