View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19474_low_6 (Length: 274)
Name: NF19474_low_6
Description: NF19474
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19474_low_6 |
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Alignment Details
Target: chr3 (Bit Score: 239; Significance: 1e-132; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 239; E-Value: 1e-132
Query Start/End: Original strand, 1 - 271
Target Start/End: Complemental strand, 26403537 - 26403268
Alignment:
| Q |
1 |
aaaaaccaaattttatttccaccacacttagccctatggattaaaaattgtgattctctatgcttttttacttgccaacatactgttatattgctcacaa |
100 |
Q |
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| T |
26403537 |
aaaagccaaattttatttccacctcacttagccctatggattaaaaattgtgattctctatgctttttaacttgccaacatactgttatgttgctcacaa |
26403438 |
T |
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| Q |
101 |
ctataagtaacataagtatacagtttgagcatcttaggatccattttttgtattgcttggtcaccaacactatcacttgtagttgcactaccaccattga |
200 |
Q |
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| T |
26403437 |
ctataagtaacataagtatacagtttgagcatcttaggatccattttttgtgttgcttggtca-caacactatcacttgtagttgcactaccaccattga |
26403339 |
T |
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| Q |
201 |
tgcggttcttcttaacatgaccaagatttgatttctctatattcatgttattgttgttgttgatgatgtcc |
271 |
Q |
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| T |
26403338 |
tgctgttcttcttaacatgaccaagatttgatttctctatattcatgttattgttgttgttgatgatgtcc |
26403268 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 91 - 196
Target Start/End: Complemental strand, 26395520 - 26395415
Alignment:
| Q |
91 |
ttgctcacaactataagtaacataagtatacagtttgagcatcttaggatccattttttgtattgcttggtcaccaacactatcacttgtagttgcacta |
190 |
Q |
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|||||||||| ||||||| ||| |||||||| |||||||| |||| ||||||| |||||| ||||||| |||||||||| | || ||| || ||||||| |
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| T |
26395520 |
ttgctcacaaatataagttacacaagtataccgtttgagcctctttggatccaaattttgtgttgcttgatcaccaacaccaacatttgcagatgcacta |
26395421 |
T |
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| Q |
191 |
ccacca |
196 |
Q |
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|||||| |
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| T |
26395420 |
ccacca |
26395415 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 173 - 257
Target Start/End: Complemental strand, 26402577 - 26402493
Alignment:
| Q |
173 |
tcacttgtagttgcactaccaccattgatgcggttcttcttaacatgaccaagatttgatttctctatattcatgttattgttgt |
257 |
Q |
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|||| ||||||||| ||||||||||| ||| ||||||||| || || ||||||||||||||| |||||||| | ||||||||||| |
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| T |
26402577 |
tcacctgtagttgctctaccaccattcatgtggttcttctcaatataaccaagatttgatttttctatatttaagttattgttgt |
26402493 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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