View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19474_low_8 (Length: 243)
Name: NF19474_low_8
Description: NF19474
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19474_low_8 |
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Alignment Details
Target: chr5 (Bit Score: 83; Significance: 2e-39; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 83; E-Value: 2e-39
Query Start/End: Original strand, 16 - 98
Target Start/End: Original strand, 33272690 - 33272772
Alignment:
| Q |
16 |
catatatatttaactcaaactttgaatgtatttatcaacaaatattctacaataactaacaataaagtataagcaatcccctt |
98 |
Q |
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| T |
33272690 |
catatatatttaactcaaactttgaatgtatttatcaacaaatattctacaataactaacaataaagtataagcaatcccctt |
33272772 |
T |
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Target: chr5; HSP #2
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 167 - 231
Target Start/End: Original strand, 33272836 - 33272900
Alignment:
| Q |
167 |
tatatgcctaaccaaataaaactagcttagaaaaaagatcaaggattttaaataccgggcatatt |
231 |
Q |
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| T |
33272836 |
tatatgcctaaccaaataaaactagcttagaaaaaagatcaaggattttaaataccgggcatatt |
33272900 |
T |
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