View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19475_high_11 (Length: 534)
Name: NF19475_high_11
Description: NF19475
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19475_high_11 |
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Alignment Details
Target: chr3 (Bit Score: 463; Significance: 0; HSPs: 5)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 463; E-Value: 0
Query Start/End: Original strand, 17 - 516
Target Start/End: Original strand, 29332229 - 29332730
Alignment:
| Q |
17 |
tacaaaatagaagacacagaaatcatgcaaaactttgaagtgtcccatcagaatctgttgaagtatctattgaatttacatgacatgattgctctttcta |
116 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
29332229 |
tacaaaatagaagacacagaaatcatgcaaaactttgaagtgtcccatcagaatctgttgaagtatctattgaatttacatgacatgattgctctttcta |
29332328 |
T |
|
| Q |
117 |
caaggtaatgcatgatcaagaaaacact--atggatttaaagctcattgaatatcatatcgaattatacgtaccatcccgttgaggtttttctctgcaat |
214 |
Q |
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|||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| ||||||| |||||||||||||||||||||| |
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| T |
29332329 |
caaggtaatgcatgatcaagaaaacactttatggatttaaagctcattgaatatcatatcgaattatacataccatctcgttgaggtttttctctgcaat |
29332428 |
T |
|
| Q |
215 |
tgaagcaatggcaagcatagctgcatgacgtaaccgccaatcaacattcgatgcatatttcgttgttatcatcccaattgcagtgggaacaaacacatat |
314 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
29332429 |
tgaagcaatggcaagcatagctgcatgacgtaaccgccaatcaacattcgatgcatatttcgttgttatcatcccaattgcagtgggaacaaacacatat |
29332528 |
T |
|
| Q |
315 |
tcatccccatctaaagagaggcaattgaacaagaactgtccatgatagaaagcatcggaaaaccccacttctgtacaattcttatcatccacatcatacc |
414 |
Q |
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||||||||||||||||||||| |||||||||||||||||||| ||| ||||||||||||||||||| ||||||||||||||||||||||||||||||||| |
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| T |
29332529 |
tcatccccatctaaagagaggaaattgaacaagaactgtccacgatggaaagcatcggaaaaccccgcttctgtacaattcttatcatccacatcatacc |
29332628 |
T |
|
| Q |
415 |
aaagaggatcatcaataacacacgacagcatcttcatagcaaccgcaaataccctcttcacttcctccagagaaagattcccaatcacactttccatcgt |
514 |
Q |
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||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
29332629 |
aaagaggatcatcaataacacacgatagcatcttcatagcaaccgcaaataccctcttcacttcctccagagaaagattcccaatcacactttccatcgt |
29332728 |
T |
|
| Q |
515 |
ct |
516 |
Q |
| |
|
|| |
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|
| T |
29332729 |
ct |
29332730 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 74; E-Value: 1e-33
Query Start/End: Original strand, 180 - 493
Target Start/End: Original strand, 29321203 - 29321516
Alignment:
| Q |
180 |
atacgtaccatcccgttgaggtttttctctgcaattgaagcaatggcaagcatagctgcatgacgtaaccgccaatcaacattcgatgcatatttcgttg |
279 |
Q |
| |
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|||| |||| |||| |||| ||| |||||||||| || |||||||||||| |||||| ||| |||| ||||| ||||| ||| |||||| | ||| |
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| T |
29321203 |
atacataccttccctttgatgttactctctgcaatccaactaatggcaagcattgctgcacaacggaaccaccaataaacatgagatacatattgcattg |
29321302 |
T |
|
| Q |
280 |
ttatcatcccaattgcagtgggaacaaacacatattcatccccatctaaagagaggcaattgaacaagaactgtccatgatagaaagcatcggaaaaccc |
379 |
Q |
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| T |
29321303 |
tcatcatctcaattgccgtgggaacaaaaacatcttcatgcccatctgtagtgagcgatttgaacaagaagaccccaaggtagaaagcatctaacatccc |
29321402 |
T |
|
| Q |
380 |
cacttctgtacaattcttatcatccacatcataccaaagaggatcatcaataacacacgacagcatcttcatagcaaccgcaaataccctcttcacttcc |
479 |
Q |
| |
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| |||||||||||||||| ||||||||||||||||||||||||||||||||||||| ||| |||| |||||||| || |||||| |||||||| |
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| T |
29321403 |
agcagtaatacaattcttatcatcaacatcataccaaagaggatcatcaataacacacgacaacatgttcacagcaaccgtaactacccttctcacttcc |
29321502 |
T |
|
| Q |
480 |
tccagagaaagatt |
493 |
Q |
| |
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|| |||||||||| |
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| T |
29321503 |
tcatgagaaagatt |
29321516 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 94 - 334
Target Start/End: Original strand, 29303948 - 29304189
Alignment:
| Q |
94 |
acatgacatgattgctctttctacaaggtaatgcatgatcaagaaaacactatgga-tttaaagctcattgaatatcatatcgaattatacgtac-catc |
191 |
Q |
| |
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|||||||||||||||| ||||||||||||||||||| ||| | |||||| | || || |||||||||| |||||||||| | |||| ||| | | |
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| T |
29303948 |
acatgacatgattgctttttctacaaggtaatgcatcatcgaaaaaacaattgagagttcaaagctcattcaatatcatat-gtcatatagatacatacc |
29304046 |
T |
|
| Q |
192 |
ccgttgaggtttttctctgcaattgaagcaatggcaagcatagctgcatgacgtaaccgccaatcaacattcgatgcatatttcgttgttatcatcccaa |
291 |
Q |
| |
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|| |||| |||| |||||||||| || |||||| || || ||||||||||| | | |||||||| ||| |||||||| ||| ||||||| || ||| |
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| T |
29304047 |
cctttgaagtttatctctgcaatccaaccaatggtaaatattgctgcatgacgaagcttccaatcaagatttgatgcataattcattgttattgtctcaa |
29304146 |
T |
|
| Q |
292 |
ttgcagtgggaacaaacacatattcatccccatctaaagagag |
334 |
Q |
| |
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|||| |||||||||||||| || ||||||||| ||| |||| |
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| T |
29304147 |
ttgccatgggaacaaacacaccttgatccccatcaaaacagag |
29304189 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 402 - 493
Target Start/End: Original strand, 29304257 - 29304348
Alignment:
| Q |
402 |
tccacatcataccaaagaggatcatcaataacacacgacagcatcttcatagcaaccgcaaataccctcttcacttcctccagagaaagatt |
493 |
Q |
| |
|
|||||||||||||||||||||||||||| || |||||||| ||| || || ||||| ||| || ||||||| |||||| |||||||||| |
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|
| T |
29304257 |
tccacatcataccaaagaggatcatcaacaatacacgacaacatgtttatggcaactacaaggactctcttcaattcctcacgagaaagatt |
29304348 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 375 - 489
Target Start/End: Original strand, 29295142 - 29295256
Alignment:
| Q |
375 |
aaccccacttctgtacaattcttatcatccacatcataccaaagaggatcatcaataacacacgacagcatcttcatagcaaccgcaaataccctcttca |
474 |
Q |
| |
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||||| || ||| |||||||||||||||| ||||||||||||| ||||||||| | |||| |||| ||| | ||| ||| | |||||| ||||||| |
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| T |
29295142 |
aacccaacatctttacaattcttatcatcaacatcataccaaacaggatcatccacaacatgtgacatcatatctataataacagaaaatactctcttca |
29295241 |
T |
|
| Q |
475 |
cttcctccagagaaa |
489 |
Q |
| |
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|||||||| |||||| |
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|
| T |
29295242 |
cttcctccggagaaa |
29295256 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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