View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF19475_high_17 (Length: 475)

Name: NF19475_high_17
Description: NF19475
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF19475_high_17
NF19475_high_17
[»] scaffold0024 (1 HSPs)
scaffold0024 (327-465)||(12975-13113)
[»] chr7 (5 HSPs)
chr7 (37-188)||(19741979-19742130)
chr7 (70-165)||(37012176-37012271)
chr7 (70-165)||(19606845-19606940)
chr7 (68-321)||(26084105-26084356)
chr7 (68-321)||(26107892-26108143)
[»] chr2 (3 HSPs)
chr2 (68-188)||(19482518-19482638)
chr2 (70-155)||(28155559-28155644)
chr2 (270-326)||(21808019-21808075)
[»] chr4 (1 HSPs)
chr4 (37-186)||(51765108-51765257)
[»] chr8 (1 HSPs)
chr8 (77-165)||(21555622-21555710)
[»] chr6 (5 HSPs)
chr6 (68-321)||(4501296-4501547)
chr6 (68-321)||(15824848-15825099)
chr6 (79-165)||(21752939-21753025)
chr6 (79-165)||(33580509-33580595)
chr6 (68-321)||(34310842-34311093)
[»] chr5 (4 HSPs)
chr5 (68-321)||(549694-549945)
chr5 (70-165)||(1223396-1223491)
chr5 (69-128)||(9846088-9846147)
chr5 (68-321)||(30280106-30280357)
[»] scaffold1049 (1 HSPs)
scaffold1049 (68-321)||(1221-1472)
[»] chr3 (1 HSPs)
chr3 (270-307)||(17478463-17478500)
[»] chr1 (1 HSPs)
chr1 (61-129)||(6097111-6097179)


Alignment Details
Target: scaffold0024 (Bit Score: 127; Significance: 2e-65; HSPs: 1)
Name: scaffold0024
Description:

Target: scaffold0024; HSP #1
Raw Score: 127; E-Value: 2e-65
Query Start/End: Original strand, 327 - 465
Target Start/End: Original strand, 12975 - 13113
Alignment:
Q  327 tctttgccctctagtattaaaatctctaattccgatactagaacaaccaaggtatgtaagcttcaaaaatctatatatggcctcaagcaggcaagtagac 426  Q
    ||||||||| || |||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||    
T  12975 tctttgccccctggtattaaaatctctaattccgatactagaacaaccaaggtatgtgagcttcaaaaatctatatatggcctcaagcaggcaagtagac 13074  T
Q  427 aatggtattctaagttatctgaatctctcatttcctttg 465  Q
    |||||||||||||||||||||||||||||||||||||||    
T  13075 aatggtattctaagttatctgaatctctcatttcctttg 13113  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 56; Significance: 5e-23; HSPs: 5)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 56; E-Value: 5e-23
Query Start/End: Original strand, 37 - 188
Target Start/End: Original strand, 19741979 - 19742130
Alignment:
Q  37 tggtctatagttgaccttcctgaaggtaaaattcctattggttgtaaatgggtttataagattaaacaccatgctgatggttctattgaaaggtataagg 136  Q
    |||||| ||||||| |||||  | || ||| ||||||||||||| |||||||| |||||| ||||| | |||||  |||||||||||||  | || ||||    
T  19741979 tggtctgtagttgatcttccccatggcaaagttcctattggttgcaaatgggtgtataaggttaaatatcatgccaatggttctattgagcgttacaagg 19742078  T
Q  137 atagattagtagctaaaggttatactcaattagaatgagttgattattttga 188  Q
     ||| ||||| |||||||| ||| ||||||||||| ||||||||||||||||    
T  19742079 ctaggttagtcgctaaagggtattctcaattagaaggagttgattattttga 19742130  T

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Target: chr7; HSP #2
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 70 - 165
Target Start/End: Original strand, 37012176 - 37012271
Alignment:
Q  70 cctattggttgtaaatgggtttataagattaaacaccatgctgatggttctattgaaaggtataaggatagattagtagctaaaggttatactcaa 165  Q
    ||||| |||||||||||||| ||||| |||||| | |||||| ||||  | |||||||| ||||||| ||||||||| |||||||| |||| ||||    
T  37012176 cctatcggttgtaaatgggtctataaaattaaatatcatgctaatggcaccattgaaagatataaggctagattagtcgctaaaggatataatcaa 37012271  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 70 - 165
Target Start/End: Complemental strand, 19606940 - 19606845
Alignment:
Q  70 cctattggttgtaaatgggtttataagattaaacaccatgctgatggttctattgaaaggtataaggatagattagtagctaaaggttatactcaa 165  Q
    ||||| |||||||||||||| ||||| || ||| | |||||| ||||  | |||||||| ||||||| ||||||||| |||||||| |||| ||||    
T  19606940 cctatcggttgtaaatgggtctataaaatcaaatatcatgctaatggcaccattgaaagatataaggctagattagtcgctaaaggatataatcaa 19606845  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 68 - 321
Target Start/End: Complemental strand, 26084356 - 26084105
Alignment:
Q  68 ttcctattggttgtaaatgggtttataagattaaacaccatgctgatggttctattgaaaggtataaggatagattagtagctaaaggttatactcaatt 167  Q
    |||| ||||| || || |||||||| || | |||| ||||  ||||||||||| |||||||| |||| |   | ||||| || || |||||||||||| |    
T  26084356 ttccaattggatgcaagtgggtttacaaaactaaataccactctgatggttctcttgaaaggcataaagcccggttagttgcaaagggttatactcaaat 26084257  T
Q  168 agaatgagttgattattttgagatacttttttacctattgctaaactaacaactatcagaactttacttgctttagcttccattaaagattggtatcttg 267  Q
     ||| |||||||||| |||||  |||||||| |||  |||| ||| | || ||  | ||||| |||||| |||| ||  |||| ||||  |||| |||||    
T  26084256 ggaaggagttgattactttga--tactttttcaccggttgcaaaaatgactacagttagaacattactttctttggcagccatcaaagggtggtttcttg 26084159  T
Q  268 aacaacttgatgttaataatgctttcttacatggggatctccatgaagaagttt 321  Q
    | ||||||||||| |||||||| ||  | ||||| || ||| ||||||||||||    
T  26084158 agcaacttgatgtcaataatgcatttctccatggtgacctcaatgaagaagttt 26084105  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 68 - 321
Target Start/End: Complemental strand, 26108143 - 26107892
Alignment:
Q  68 ttcctattggttgtaaatgggtttataagattaaacaccatgctgatggttctattgaaaggtataaggatagattagtagctaaaggttatactcaatt 167  Q
    |||| ||||| || || |||||||| || | |||| ||||  |||||||| || |||||||| |||| |   | ||||| || || |||||||||||| |    
T  26108143 ttccaattggatgcaagtgggtttacaaaactaaataccactctgatggtactcttgaaaggcataaagcccggttagttgcaaagggttatactcaaat 26108044  T
Q  168 agaatgagttgattattttgagatacttttttacctattgctaaactaacaactatcagaactttacttgctttagcttccattaaagattggtatcttg 267  Q
     ||| |||||||||| |||||  |||||||| |||  |||| ||| | || ||  | ||||| |||||| |||| ||  |||| ||||  |||| |||||    
T  26108043 ggaaggagttgattactttga--tactttttcaccggttgcaaaaatgactacagttagaacattactttctttggcagccatcaaagggtggtttcttg 26107946  T
Q  268 aacaacttgatgttaataatgctttcttacatggggatctccatgaagaagttt 321  Q
    | ||||||||||| |||||||| ||  | ||||| || ||| ||||||||||||    
T  26107945 agcaacttgatgtcaataatgcatttctccatggtgacctcaatgaagaagttt 26107892  T

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Target: chr2 (Bit Score: 53; Significance: 3e-21; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 68 - 188
Target Start/End: Original strand, 19482518 - 19482638
Alignment:
Q  68 ttcctattggttgtaaatgggtttataagattaaacaccatgctgatggttctattgaaaggtataaggatagattagtagctaaaggttatactcaatt 167  Q
    ||||||||||||| |||||||| |||||| ||||| | |||||  |||||||||||||  | || |||| ||| ||||| |||||||| ||| |||||||    
T  19482518 ttcctattggttgcaaatgggtgtataaggttaaatatcatgccaatggttctattgagcgttacaaggctaggttagtcgctaaagggtattctcaatt 19482617  T
Q  168 agaatgagttgattattttga 188  Q
    |||| ||||||||||||||||    
T  19482618 agaaggagttgattattttga 19482638  T

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Target: chr2; HSP #2
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 70 - 155
Target Start/End: Complemental strand, 28155644 - 28155559
Alignment:
Q  70 cctattggttgtaaatgggtttataagattaaacaccatgctgatggttctattgaaaggtataaggatagattagtagctaaagg 155  Q
    ||||||||||||||||||||||| || |||||| | |||| |||||| |||||||| || || || | |||||| || ||||||||    
T  28155644 cctattggttgtaaatgggtttacaaaattaaatatcatgttgatggatctattgagagatacaaagctagattggtggctaaagg 28155559  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 270 - 326
Target Start/End: Complemental strand, 21808075 - 21808019
Alignment:
Q  270 caacttgatgttaataatgctttcttacatggggatctccatgaagaagtttttatg 326  Q
    ||||||||||| ||||||||||| |||||||| ||||| || ||||| |||| ||||    
T  21808075 caacttgatgtcaataatgcttttttacatggtgatctgcaagaagacgtttatatg 21808019  T

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Target: chr4 (Bit Score: 46; Significance: 5e-17; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 37 - 186
Target Start/End: Original strand, 51765108 - 51765257
Alignment:
Q  37 tggtctatagttgaccttcctgaaggtaaaattcctattggttgtaaatgggtttataagattaaacaccatgctgatggttctattgaaaggtataagg 136  Q
    |||||| ||||||| |||||  | || ||| ||||||||||||| |||||||| |||||| ||||| | |||||  ||||||| |||||  | || || |    
T  51765108 tggtctgtagttgatcttccccatggcaaagttcctattggttgcaaatgggtgtataaggttaaatatcatgcaaatggttcaattgagcgttacaatg 51765207  T
Q  137 atagattagtagctaaaggttatactcaattagaatgagttgattatttt 186  Q
     ||| ||||| |||||||| ||| ||||||||||| ||||||||||||||    
T  51765208 ctaggttagtcgctaaagggtattctcaattagaaggagttgattatttt 51765257  T

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Target: chr8 (Bit Score: 41; Significance: 0.00000000000005; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 77 - 165
Target Start/End: Complemental strand, 21555710 - 21555622
Alignment:
Q  77 gttgtaaatgggtttataagattaaacaccatgctgatggttctattgaaaggtataaggatagattagtagctaaaggttatactcaa 165  Q
    ||||||||||||| ||||| |||||| |||||||| ||||  | |||||||| ||||||| ||||||||| |||||||| |||| ||||    
T  21555710 gttgtaaatgggtctataaaattaaataccatgctaatggcaccattgaaagttataaggctagattagtcgctaaaggatataatcaa 21555622  T

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Target: chr6 (Bit Score: 35; Significance: 0.0000000002; HSPs: 5)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 68 - 321
Target Start/End: Original strand, 4501296 - 4501547
Alignment:
Q  68 ttcctattggttgtaaatgggtttataagattaaacaccatgctgatggttctattgaaaggtataaggatagattagtagctaaaggttatactcaatt 167  Q
    |||| ||||| || || |||||||| || | |||| ||||  ||||||||||| |||||||| |||| |   | ||||| || || |||||||||||| |    
T  4501296 ttccaattggatgcaagtgggtttacaaaactaaataccactctgatggttctcttgaaaggcataaagcccggttagttgcaaagggttatactcaaat 4501395  T
Q  168 agaatgagttgattattttgagatacttttttacctattgctaaactaacaactatcagaactttacttgctttagcttccattaaagattggtatcttg 267  Q
     ||| |||||||||| |||||  |||||||| |||  |||| ||| | || ||  | ||||| |||||| |||| ||  |||| ||||  |||| |||||    
T  4501396 ggaaggagttgattactttga--tactttttcaccggttgcaaaaatgactacagttagaacattactttctttggcagccatcaaagggtggtttcttg 4501493  T
Q  268 aacaacttgatgttaataatgctttcttacatggggatctccatgaagaagttt 321  Q
    | ||||||||||| |||||||| ||  | ||||| || ||| ||||||||||||    
T  4501494 agcaacttgatgtcaataatgcatttctccatggtgacctcaatgaagaagttt 4501547  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 68 - 321
Target Start/End: Original strand, 15824848 - 15825099
Alignment:
Q  68 ttcctattggttgtaaatgggtttataagattaaacaccatgctgatggttctattgaaaggtataaggatagattagtagctaaaggttatactcaatt 167  Q
    |||| ||||| || || |||||||| || | |||| ||||  ||||||||||| |||||||| |||| |   | ||||| || || |||||||||||| |    
T  15824848 ttccaattggatgcaagtgggtttacaaaactaaataccactctgatggttctcttgaaaggcataaagcccggttagttgcaaagggttatactcaaat 15824947  T
Q  168 agaatgagttgattattttgagatacttttttacctattgctaaactaacaactatcagaactttacttgctttagcttccattaaagattggtatcttg 267  Q
     ||| |||||||||| |||||  |||||||| |||  |||| ||| | || ||  | ||||| |||||| |||| ||  |||| ||||  |||| |||||    
T  15824948 ggaaggagttgattactttga--tactttttcaccggttgcaaaaatgactacagttagaacattactttctttggcagccatcaaagggtggtttcttg 15825045  T
Q  268 aacaacttgatgttaataatgctttcttacatggggatctccatgaagaagttt 321  Q
    | ||||||||||| |||||||| ||  | ||||| || ||| ||||||||||||    
T  15825046 agcaacttgatgtcaataatgcatttctccatggtgacctcaatgaagaagttt 15825099  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 79 - 165
Target Start/End: Complemental strand, 21753025 - 21752939
Alignment:
Q  79 tgtaaatgggtttataagattaaacaccatgctgatggttctattgaaaggtataaggatagattagtagctaaaggttatactcaa 165  Q
    ||||||||||| ||||| |||||  | || ||  |||||  ||||||||||||||| | | |||||||||||||||| |||||||||    
T  21753025 tgtaaatgggtgtataaaattaagtatcaagcaaatggtgatattgaaaggtataaagctcgattagtagctaaagggtatactcaa 21752939  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 79 - 165
Target Start/End: Original strand, 33580509 - 33580595
Alignment:
Q  79 tgtaaatgggtttataagattaaacaccatgctgatggttctattgaaaggtataaggatagattagtagctaaaggttatactcaa 165  Q
    ||||||||||| ||||| |||||  | || ||  |||||  ||||||||||||||| | | |||||||||||||||| |||||||||    
T  33580509 tgtaaatgggtgtataaaattaagtatcaagcaaatggtgatattgaaaggtataaagctcgattagtagctaaagggtatactcaa 33580595  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 68 - 321
Target Start/End: Original strand, 34310842 - 34311093
Alignment:
Q  68 ttcctattggttgtaaatgggtttataagattaaacaccatgctgatggttctattgaaaggtataaggatagattagtagctaaaggttatactcaatt 167  Q
    |||| ||||| || || |||||||| || | |||| ||||  ||||||||||| |||||||| |||| |   | ||||| || || |||||||||||| |    
T  34310842 ttccaattggatgcaagtgggtttacaaaactaaataccactctgatggttctcttgaaaggcataaagcccggttagttgcaaagggttatactcaaat 34310941  T
Q  168 agaatgagttgattattttgagatacttttttacctattgctaaactaacaactatcagaactttacttgctttagcttccattaaagattggtatcttg 267  Q
     ||| |||| ||||| |||||  |||||||| |||  |||| ||| | || ||  | ||||| |||||| |||| ||  |||| ||||  |||| |||||    
T  34310942 ggaaggagtagattactttga--tactttttcaccggttgcaaaaatgactacagttagaacattactttctttggcagccatcaaagggtggtttcttg 34311039  T
Q  268 aacaacttgatgttaataatgctttcttacatggggatctccatgaagaagttt 321  Q
    | ||||||||||| |||||||| ||  | ||||| || ||| ||||||||||||    
T  34311040 agcaacttgatgtcaataatgcatttctccatggtgacctcaatgaagaagttt 34311093  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 35; Significance: 0.0000000002; HSPs: 4)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 68 - 321
Target Start/End: Complemental strand, 549945 - 549694
Alignment:
Q  68 ttcctattggttgtaaatgggtttataagattaaacaccatgctgatggttctattgaaaggtataaggatagattagtagctaaaggttatactcaatt 167  Q
    |||| ||||| || || |||||||| || | |||| ||||  ||||||||||| |||||||| |||| |   | ||||| || || |||||||||||| |    
T  549945 ttccaattggatgcaagtgggtttacaaaactaaataccactctgatggttctcttgaaaggcataaagcccggttagttgcaaagggttatactcaaat 549846  T
Q  168 agaatgagttgattattttgagatacttttttacctattgctaaactaacaactatcagaactttacttgctttagcttccattaaagattggtatcttg 267  Q
     ||| |||||||||| |||||  |||||||| |||  |||| ||| | || ||  | ||||| |||||| |||| ||  |||| ||||  |||| |||||    
T  549845 ggaaggagttgattactttga--tactttttcaccggttgcaaaaatgactacagttagaacattactttctttggcagccatcaaagggtggtttcttg 549748  T
Q  268 aacaacttgatgttaataatgctttcttacatggggatctccatgaagaagttt 321  Q
    | ||||||||||| |||||||| ||  | ||||| || ||| ||||||||||||    
T  549747 agcaacttgatgtcaataatgcatttctccatggtgacctcaatgaagaagttt 549694  T

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Target: chr5; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 70 - 165
Target Start/End: Complemental strand, 1223491 - 1223396
Alignment:
Q  70 cctattggttgtaaatgggtttataagattaaacaccatgctgatggttctattgaaaggtataaggatagattagtagctaaaggttatactcaa 165  Q
    ||||||||||| |||||||| ||||| |||||| | |||||| ||||  |  | ||||||||||||| | ||||||| |||||||| | |||||||    
T  1223491 cctattggttgaaaatgggtctataaaattaaatatcatgctaatggcaccgtagaaaggtataaggctcgattagtcgctaaaggatgtactcaa 1223396  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 69 - 128
Target Start/End: Complemental strand, 9846147 - 9846088
Alignment:
Q  69 tcctattggttgtaaatgggtttataagattaaacaccatgctgatggttctattgaaag 128  Q
    ||||||||||||||  ||||| ||||| || ||||||||||| ||||| |||||||||||    
T  9846147 tcctattggttgtaggtgggtatataaaatcaaacaccatgcagatggatctattgaaag 9846088  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 68 - 321
Target Start/End: Complemental strand, 30280357 - 30280106
Alignment:
Q  68 ttcctattggttgtaaatgggtttataagattaaacaccatgctgatggttctattgaaaggtataaggatagattagtagctaaaggttatactcaatt 167  Q
    |||| ||||| || || |||||||| || | |||| ||||  ||||||||||| |||||||| |||| |   | ||||| || || |||||||||||| |    
T  30280357 ttccaattggatgcaagtgggtttacaaaactaaataccactctgatggttctcttgaaaggcataaagcccggttagttgcaaagggttatactcaaat 30280258  T
Q  168 agaatgagttgattattttgagatacttttttacctattgctaaactaacaactatcagaactttacttgctttagcttccattaaagattggtatcttg 267  Q
     ||| |||||||||| |||||  |||||||| |||  |||| ||| | || ||  | ||||| |||||| |||| ||  |||| ||||  |||| |||||    
T  30280257 ggaaggagttgattactttga--tactttttcaccggttgcaaaaatgactacagttagaacattactttctttggcagccatcaaagggtggtttcttg 30280160  T
Q  268 aacaacttgatgttaataatgctttcttacatggggatctccatgaagaagttt 321  Q
    | ||| ||||||| |||||||| ||  | ||||| || ||| ||||||||||||    
T  30280159 agcaatttgatgtcaataatgcatttctccatggtgacctcaatgaagaagttt 30280106  T

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Target: scaffold1049 (Bit Score: 31; Significance: 0.00000004; HSPs: 1)
Name: scaffold1049
Description:

Target: scaffold1049; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 68 - 321
Target Start/End: Complemental strand, 1472 - 1221
Alignment:
Q  68 ttcctattggttgtaaatgggtttataagattaaacaccatgctgatggttctattgaaaggtataaggatagattagtagctaaaggttatactcaatt 167  Q
    |||| ||||| || || |||||||| || | |||| ||||  ||||||||||| |||||||| |||| |   | ||||| || || |||||||||||| |    
T  1472 ttccaattggatgcaagtgggtttacaaaactaaataccactctgatggttctcttgaaaggcataaagcccggttagttgcaaagggttatactcaaat 1373  T
Q  168 agaatgagttgattattttgagatacttttttacctattgctaaactaacaactatcagaactttacttgctttagcttccattaaagattggtatcttg 267  Q
     ||| |||| ||||| |||||  |||||||| |||| |||| ||| | || ||  | ||||| |||||| |||| ||  |||| ||||  |||| |||||    
T  1372 ggaaggagtagattactttga--tactttttcacctgttgcaaaaatgactacagttagaacattactttctttggcagccatcaaagggtggtttcttg 1275  T
Q  268 aacaacttgatgttaataatgctttcttacatggggatctccatgaagaagttt 321  Q
    | ||| ||||||| |||||||| ||  | ||||| || ||| ||||||||||||    
T  1274 agcaatttgatgtcaataatgcatttctccatggtgacctcaatgaagaagttt 1221  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 270 - 307
Target Start/End: Complemental strand, 17478500 - 17478463
Alignment:
Q  270 caacttgatgttaataatgctttcttacatggggatct 307  Q
    ||||||||||| |||||||||||||| |||||||||||    
T  17478500 caacttgatgtcaataatgctttcttgcatggggatct 17478463  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 29; Significance: 0.0000007; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 61 - 129
Target Start/End: Original strand, 6097111 - 6097179
Alignment:
Q  61 ggtaaaattcctattggttgtaaatgggtttataagattaaacaccatgctgatggttctattgaaagg 129  Q
    ||||||| ||| ||||| ||||| ||||| ||||| |||||| | || ||||||||||| |||||||||    
T  6097111 ggtaaaactcccattggctgtaagtgggtctataaaattaaatatcacgctgatggttccattgaaagg 6097179  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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