View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19475_high_18 (Length: 471)
Name: NF19475_high_18
Description: NF19475
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19475_high_18 |
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Alignment Details
Target: chr2 (Bit Score: 286; Significance: 1e-160; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 286; E-Value: 1e-160
Query Start/End: Original strand, 18 - 320
Target Start/End: Original strand, 521479 - 521783
Alignment:
| Q |
18 |
ctatatagtggtgcactccatcaatgtggagaggtaatatagcattcttcaattgtaaaatgaaggatgttat--cttgtgttgaaaaaactgagattaa |
115 |
Q |
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| T |
521479 |
ctatatagtggtgcactccatcaatgtggagaggtaatatagcattcttcaattgtaaaatgaaggatgttatatcttgtgttgaaaaaactgagattaa |
521578 |
T |
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| Q |
116 |
atgctgtttctttgcaacactacaaatagttcttctaaaatattaattggtgaatgcagggtcatgaaccatttgtttcatatgaaggtcttgaacagct |
215 |
Q |
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| T |
521579 |
atgctgtttctttgcaacactacaaatagttcttctaaaatattaattggtgaatgcagggtcatgaaccatttgtttcatatgaaggtcttgaacagct |
521678 |
T |
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| Q |
216 |
gcaccggtttttatttgttctcgggatcactcatgttctgtatagttgtctcgctgttggtttagcaatgagcaaggtcagtcattaaaatgtccagttt |
315 |
Q |
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| T |
521679 |
gcaccggtttttatttgttctcgggatcactcatgttctgtatagttgtctcgctgttggtttagcgatgagcaaggtcagtcattaaaatttccagttt |
521778 |
T |
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| Q |
316 |
attat |
320 |
Q |
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||||| |
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| T |
521779 |
attat |
521783 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 87; E-Value: 2e-41
Query Start/End: Original strand, 357 - 459
Target Start/End: Original strand, 521813 - 521915
Alignment:
| Q |
357 |
attcaataagggtatctactagagttctatagaagaatgaacatgtttcgtatattttctacccattggaggaacttgaggtgtcaaagtgagttgcata |
456 |
Q |
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| T |
521813 |
attcaatatgggtatctactagagttcaatagaagaatgaacatgtttcttatattttctacccattggtggaacttgaggtgtcaaagtgagttgcata |
521912 |
T |
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| Q |
457 |
gat |
459 |
Q |
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||| |
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| T |
521913 |
gat |
521915 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 37; Significance: 0.00000000001; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 172 - 252
Target Start/End: Original strand, 8826866 - 8826946
Alignment:
| Q |
172 |
cagggtcatgaaccatttgtttcatatgaaggtcttgaacagctgcaccggtttttatttgttctcgggatcactcatgtt |
252 |
Q |
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| T |
8826866 |
cagggtcatgaatcatttgcttcttatgaaagtcttgagcagcttcatcgctttgtgtttgttcttgggatcactcatgtt |
8826946 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 34; Significance: 0.0000000007; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 411 - 456
Target Start/End: Original strand, 44129500 - 44129545
Alignment:
| Q |
411 |
ttttctacccattggaggaacttgaggtgtcaaagtgagttgcata |
456 |
Q |
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| T |
44129500 |
ttttctaaccattggaggagcttgaggtggcaaagtgagttgcata |
44129545 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 407 - 452
Target Start/End: Original strand, 5033206 - 5033251
Alignment:
| Q |
407 |
tatattttctacccattggaggaacttgaggtgtcaaagtgagttg |
452 |
Q |
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| T |
5033206 |
tatattttgtactcattggagtaacttgagatgtcaaagtgagttg |
5033251 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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