View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19475_high_23 (Length: 460)
Name: NF19475_high_23
Description: NF19475
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19475_high_23 |
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Alignment Details
Target: chr3 (Bit Score: 423; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 423; E-Value: 0
Query Start/End: Original strand, 20 - 450
Target Start/End: Complemental strand, 7037143 - 7036713
Alignment:
| Q |
20 |
catcggtggttgcatggttattattaaatcaggattgtcagctctcctagtctattttctctctttttattcccaatagaagagggggattgggaataaa |
119 |
Q |
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| T |
7037143 |
catcggtggttgcatggttattattaaatcaggattgtcagctctcctagtctattttctctctttttattcccaatagaagagggggattgggaataaa |
7037044 |
T |
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| Q |
120 |
taatttggggatttaatgcccttctaggaaaatgaaagttgaaattaagaaatgagggtttttggcattggtacagtgttctatcaaatagatatggtga |
219 |
Q |
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| T |
7037043 |
taatttggggatttaatgcccttctaggaaaatgaaagttgaaattaagaaatgagggtttttggcattggtacagtgttctatcaaatagatatggtga |
7036944 |
T |
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| Q |
220 |
gaaagagatggggtgtttagagagggttggagaggcaattcggtatggtggaacgatatatgcaatatatatacacgttcaggacacacgaaatatgtat |
319 |
Q |
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| T |
7036943 |
gaaagagatggggtgtttagagagggttggagaggcaattcggtatggtggaacgatatatgcaatatatatacacgttcaagacacacgaaatatgtat |
7036844 |
T |
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| Q |
320 |
tcggtaaaagaaacgtataaaatgttgatggagggattgataagtgttcctaatcaatcatggtcgaaggcttggcataaatcaatcccgttaaaagttg |
419 |
Q |
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| T |
7036843 |
tcggtaaaagaaacgtataaaatgttgatggagggattgataagtgttcctaatcaatcatggtcgaaggcttggcataaatcaatcccgttaaaagttg |
7036744 |
T |
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| Q |
420 |
cgtgcttagcttggagattatttcagaataa |
450 |
Q |
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| T |
7036743 |
tgtgcttagcttggagattatttcagaataa |
7036713 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 31; Significance: 0.00000004; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 379 - 449
Target Start/End: Original strand, 24828175 - 24828245
Alignment:
| Q |
379 |
atggtcgaaggcttggcataaatcaatcccgttaaaagttgcgtgcttagcttggagattatttcagaata |
449 |
Q |
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| T |
24828175 |
atggtcaaaagcttggcataaatcggtcccgttaaaagtttcatgtttagtgtggagattatttcaaaata |
24828245 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 381 - 449
Target Start/End: Complemental strand, 27119125 - 27119057
Alignment:
| Q |
381 |
ggtcgaaggcttggcataaatcaatcccgttaaaagttgcgtgcttagcttggagattatttcagaata |
449 |
Q |
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| T |
27119125 |
ggtcgaaggcttgacataaatcagtgccgttaaaagtttcatgcttagttaggaaactatttcaaaata |
27119057 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 377 - 449
Target Start/End: Complemental strand, 18943316 - 18943244
Alignment:
| Q |
377 |
tcatggtcgaaggcttggcataaatcaatcccgttaaaagttgcgtgcttagcttggagattatttcagaata |
449 |
Q |
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|||||||||| ||||||||||||| || | |||| ||||||| |||| || ||||||||| | ||||| |||| |
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| T |
18943316 |
tcatggtcgagggcttggcataaagcagttccgtcaaaagtttcgtgttttgcttggagagtgtttcaaaata |
18943244 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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