View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF19475_high_24 (Length: 457)

Name: NF19475_high_24
Description: NF19475
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF19475_high_24
NF19475_high_24
[»] chr6 (4 HSPs)
chr6 (13-381)||(33050800-33051168)
chr6 (275-418)||(33032427-33032569)
chr6 (13-121)||(33032816-33032926)
chr6 (287-387)||(33032186-33032285)
[»] chr1 (4 HSPs)
chr1 (274-410)||(38903852-38903987)
chr1 (287-387)||(38903516-38903615)
chr1 (285-404)||(38904194-38904312)
chr1 (13-73)||(9901039-9901098)
[»] chr8 (2 HSPs)
chr8 (287-388)||(43522007-43522107)
chr8 (348-393)||(43522193-43522238)
[»] chr4 (4 HSPs)
chr4 (287-404)||(53017180-53017295)
chr4 (13-94)||(8264038-8264119)
chr4 (13-94)||(8277456-8277537)
chr4 (312-388)||(53017405-53017480)
[»] chr7 (1 HSPs)
chr7 (13-88)||(7975171-7975245)
[»] chr5 (1 HSPs)
chr5 (13-88)||(13838165-13838239)
[»] chr3 (1 HSPs)
chr3 (13-88)||(1293818-1293892)
[»] chr2 (1 HSPs)
chr2 (13-88)||(26543722-26543796)


Alignment Details
Target: chr6 (Bit Score: 365; Significance: 0; HSPs: 4)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 365; E-Value: 0
Query Start/End: Original strand, 13 - 381
Target Start/End: Complemental strand, 33051168 - 33050800
Alignment:
Q  13 aatattgggtatgagaaaattatcagcattgaaacatcagagtggtgcatgactatctctatgactcatcacagcccataaaatacatttcaaagtaaca 112  Q
    ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  33051168 aatattgggtatgagaaaattatcagcattgaaacatgagagtggtgcatgactatctctatgactcatcacagcccataaaatacatttcaaagtaaca 33051069  T
Q  113 tgtaattgagaaaaaatctgagaaaaaactataggacaatgcaacattgatacaccgtacataacacacaagtttgaaccaacaatgataaatttgaaac 212  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  33051068 tgtaattgagaaaaaatctgagaaaaaactataggacaatgcaacattgatacaccgtacataacacacaagtttgaaccaacaatgataaatttgaaac 33050969  T
Q  213 ataaagacactaaattaaatccaacttggatatacctaagaaacattggtaaaattacagaagaataatttgacctcaggcatccaaggaaggatagagc 312  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  33050968 ataaagacactaaattaaatccaacttggatatacctaagaaacattggtaaaattacagaagaataatttgacctcaggcatccaaggaaggatagagc 33050869  T
Q  313 agcattaactctcaagctaggcgaaaggcgaaagctcttaggcggccactgcgaatgttttgagaaaca 381  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  33050868 agcattaactctcaagctaggcgaaaggcgaaagctcttaggcggccactgcgaatgttttgagaaaca 33050800  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 104; E-Value: 1e-51
Query Start/End: Original strand, 275 - 418
Target Start/End: Complemental strand, 33032569 - 33032427
Alignment:
Q  275 gaataatttgacctcaggcatccaaggaaggatagagcagcattaactctcaagctaggcgaaaggcgaaagctcttaggcggccactgcgaatgttttg 374  Q
    |||||||| |||||||| |||||||||||||||| ||||||||||||||||||||  |||||||||||||||||||||||||||||||||||||||||||    
T  33032569 gaataattagacctcagacatccaaggaaggatacagcagcattaactctcaagcccggcgaaaggcgaaagctcttaggcggccactgcgaatgttttg 33032470  T
Q  375 agaaacaagccttatgatttatcatcattggtcattaacaatca 418  Q
    ||||||||||||||  | |||||||||||||||||| |||||||    
T  33032469 agaaacaagccttaata-ttatcatcattggtcatttacaatca 33032427  T

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Target: chr6; HSP #3
Raw Score: 68; E-Value: 3e-30
Query Start/End: Original strand, 13 - 121
Target Start/End: Complemental strand, 33032926 - 33032816
Alignment:
Q  13 aatattgggtatgagaaaattatcagcattgaaacatcagagtggtgcatgactatctctatgactcatcacagcccataaaatac--atttcaaagtaa 110  Q
    |||| |||||||||||||||||||||||  ||||||||||||||||||||||||||||||||||||||||| |||| |||||||||  | |||| |||||    
T  33032926 aataatgggtatgagaaaattatcagcacggaaacatcagagtggtgcatgactatctctatgactcatcatagccaataaaatacaaaattcagagtaa 33032827  T
Q  111 catgtaattga 121  Q
     ||||||||||    
T  33032826 tatgtaattga 33032816  T

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Target: chr6; HSP #4
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 287 - 387
Target Start/End: Complemental strand, 33032285 - 33032186
Alignment:
Q  287 ctcaggcatccaaggaaggatagagcagcattaactctcaagctaggcgaaaggcgaaagctcttaggcggccactgcgaatgttttgagaaacaagcct 386  Q
    ||||| |||||||||||||||| | |||||| |||||||||||  |||||| |||||||| |||||||||||||||||||||||||||||||||||||||    
T  33032285 ctcagacatccaaggaaggataaaacagcataaactctcaagcctggcgaa-ggcgaaagttcttaggcggccactgcgaatgttttgagaaacaagcct 33032187  T

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Target: chr1 (Bit Score: 105; Significance: 3e-52; HSPs: 4)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 105; E-Value: 3e-52
Query Start/End: Original strand, 274 - 410
Target Start/End: Complemental strand, 38903987 - 38903852
Alignment:
Q  274 agaataatttgacctcaggcatccaaggaaggatagagcagcattaactctcaagctaggcgaaaggcgaaagctcttaggcggccactgcgaatgtttt 373  Q
    |||||||||||||||||| |||||||||||||| | ||||||||||||||||||||  ||||||||||||||| ||||||||||||||||||||||||||    
T  38903987 agaataatttgacctcagacatccaaggaaggaaatagcagcattaactctcaagcccggcgaaaggcgaaagttcttaggcggccactgcgaatgtttt 38903888  T
Q  374 gagaaacaagccttatgatttatcatcattggtcatt 410  Q
    ||||||||||||||| |||||||||||||||||||||    
T  38903887 gagaaacaagcctta-gatttatcatcattggtcatt 38903852  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 287 - 387
Target Start/End: Complemental strand, 38903615 - 38903516
Alignment:
Q  287 ctcaggcatccaaggaaggatagagcagcattaactctcaagctaggcgaaaggcgaaagctcttaggcggccactgcgaatgttttgagaaacaagcct 386  Q
    ||||| |||||||||||||||| | ||||| || |||||||||  |||||| ||||||||||||||||||||||||||||||||||||||||||||||||    
T  38903615 ctcagacatccaaggaaggataaaacagcactagctctcaagcctggcgaa-ggcgaaagctcttaggcggccactgcgaatgttttgagaaacaagcct 38903517  T

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Target: chr1; HSP #3
Raw Score: 61; E-Value: 5e-26
Query Start/End: Original strand, 285 - 404
Target Start/End: Complemental strand, 38904312 - 38904194
Alignment:
Q  285 acctcaggcatccaaggaaggatag-agcagcattaactctcaagctaggcgaaaggcgaaagctcttaggcggccactgcgaatgttttgagaaacaag 383  Q
    ||||||| |||||||||||||| || | | |||||| |||||||||  |||||| |||||||||| |||||| |||||||||||||||||||||||||||    
T  38904312 acctcagacatccaaggaaggaaagtaactgcattagctctcaagcctggcgaa-ggcgaaagctattaggcagccactgcgaatgttttgagaaacaag 38904214  T
Q  384 ccttatgatttatcatcattg 404  Q
    ||||| |||||||||||||||    
T  38904213 cctta-gatttatcatcattg 38904194  T

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Target: chr1; HSP #4
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 13 - 73
Target Start/End: Original strand, 9901039 - 9901098
Alignment:
Q  13 aatattgggtatgagaaaattatcagcattgaaacatcagagtggtgcatgactatctcta 73  Q
    |||| |||||||||||||||||||||||  | || ||||||||||||||||||||||||||    
T  9901039 aataatgggtatgagaaaattatcagcacaggaa-atcagagtggtgcatgactatctcta 9901098  T

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Target: chr8 (Bit Score: 74; Significance: 9e-34; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 74; E-Value: 9e-34
Query Start/End: Original strand, 287 - 388
Target Start/End: Complemental strand, 43522107 - 43522007
Alignment:
Q  287 ctcaggcatccaaggaaggatagagcagcattaactctcaagctaggcgaaaggcgaaagctcttaggcggccactgcgaatgttttgagaaacaagcct 386  Q
    ||||| |||||||||||||||| ||||||||||||||||||||  |||||| |||||||| |||||||||||||||||||||||||||||||||||||||    
T  43522107 ctcagacatccaaggaaggataaagcagcattaactctcaagcctggcgaa-ggcgaaagttcttaggcggccactgcgaatgttttgagaaacaagcct 43522009  T
Q  387 ta 388  Q
    ||    
T  43522008 ta 43522007  T

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Target: chr8; HSP #2
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 348 - 393
Target Start/End: Complemental strand, 43522238 - 43522193
Alignment:
Q  348 tcttaggcggccactgcgaatgttttgagaaacaagccttatgatt 393  Q
    ||||||||||||| ||||||||||||||||||||||||||| ||||    
T  43522238 tcttaggcggccaatgcgaatgttttgagaaacaagccttaggatt 43522193  T

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Target: chr4 (Bit Score: 70; Significance: 2e-31; HSPs: 4)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 287 - 404
Target Start/End: Original strand, 53017180 - 53017295
Alignment:
Q  287 ctcaggcatccaaggaaggatagagcagcattaactctcaagctaggcgaaaggcgaaagctcttaggcggccactgcgaatgttttgagaaacaagcct 386  Q
    ||||| |||||||||||||||| ||||||| || |||||||||  |||||| ||||||||||||||||||||||||||||||||||||||||||||||||    
T  53017180 ctcagacatccaaggaaggataaagcagcactagctctcaagcctggcgaa-ggcgaaagctcttaggcggccactgcgaatgttttgagaaacaagcct 53017278  T
Q  387 tatgatttatcatcattg 404  Q
    | ||  ||||||||||||    
T  53017279 t-tggattatcatcattg 53017295  T

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Target: chr4; HSP #2
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 13 - 94
Target Start/End: Complemental strand, 8264119 - 8264038
Alignment:
Q  13 aatattgggtatgagaaaattatcagcattgaaacatcagagtggtgcatgactatctctatgactcatcacagcccataaa 94  Q
    |||| ||||||||||||||||||||||| || || ||||||||||||||||||||||||||||| |||||| ||||||||||    
T  8264119 aataatgggtatgagaaaattatcagcactggaatatcagagtggtgcatgactatctctatgattcatcatagcccataaa 8264038  T

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Target: chr4; HSP #3
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 13 - 94
Target Start/End: Complemental strand, 8277537 - 8277456
Alignment:
Q  13 aatattgggtatgagaaaattatcagcattgaaacatcagagtggtgcatgactatctctatgactcatcacagcccataaa 94  Q
    |||| ||||||||||||||||||||||| || || ||||||||||||||||||||||||||||| |||||| ||||||||||    
T  8277537 aataatgggtatgagaaaattatcagcactggaatatcagagtggtgcatgactatctctatgattcatcatagcccataaa 8277456  T

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Target: chr4; HSP #4
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 312 - 388
Target Start/End: Original strand, 53017405 - 53017480
Alignment:
Q  312 cagcattaactctcaagctaggcgaaaggcgaaagctcttaggcggccactgcgaatgttttgagaaacaagcctta 388  Q
    |||||||| |||||||||  |||||| ||||||||||||| | ||||||||||||||||||||||||||||||||||    
T  53017405 cagcattagctctcaagcctggcgaa-ggcgaaagctcttggtcggccactgcgaatgttttgagaaacaagcctta 53017480  T

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Target: chr7 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 13 - 88
Target Start/End: Complemental strand, 7975245 - 7975171
Alignment:
Q  13 aatattgggtatgagaaaattatcagcattgaaacatcagagtggtgcatgactatctctatgactcatcacagcc 88  Q
    |||| ||||||| ||||| |||||||||  | || |||| |||||||||||||||||||||||| |||||| ||||    
T  7975245 aataatgggtataagaaagttatcagcacaggaa-atcaaagtggtgcatgactatctctatgattcatcatagcc 7975171  T

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Target: chr5 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 13 - 88
Target Start/End: Original strand, 13838165 - 13838239
Alignment:
Q  13 aatattgggtatgagaaaattatcagcattgaaacatcagagtggtgcatgactatctctatgactcatcacagcc 88  Q
    |||| ||||||| ||||| |||||||||  | || |||| |||||||||||||||||||||||| |||||| ||||    
T  13838165 aataatgggtataagaaagttatcagcacaggaa-atcaaagtggtgcatgactatctctatgattcatcatagcc 13838239  T

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Target: chr3 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 13 - 88
Target Start/End: Original strand, 1293818 - 1293892
Alignment:
Q  13 aatattgggtatgagaaaattatcagcattgaaacatcagagtggtgcatgactatctctatgactcatcacagcc 88  Q
    |||| ||||||| ||||| |||||||||  | || |||| |||||||||||||||||||||||| |||||| ||||    
T  1293818 aataatgggtataagaaagttatcagcacaggaa-atcaaagtggtgcatgactatctctatgattcatcatagcc 1293892  T

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Target: chr2 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 13 - 88
Target Start/End: Original strand, 26543722 - 26543796
Alignment:
Q  13 aatattgggtatgagaaaattatcagcattgaaacatcagagtggtgcatgactatctctatgactcatcacagcc 88  Q
    |||| ||||||| ||||| |||||||||  | || |||| |||||||||||||||||||||||| |||||| ||||    
T  26543722 aataatgggtataagaaagttatcagcacaggaa-atcaaagtggtgcatgactatctctatgattcatcatagcc 26543796  T

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