View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19475_high_27 (Length: 443)
Name: NF19475_high_27
Description: NF19475
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19475_high_27 |
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Alignment Details
Target: chr8 (Bit Score: 336; Significance: 0; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 336; E-Value: 0
Query Start/End: Original strand, 54 - 430
Target Start/End: Complemental strand, 40313844 - 40313472
Alignment:
| Q |
54 |
aacacaagaattaatcttgttactaataatttacatatgatattacataaatttcaatgtcctccacctgatatgatatctctaggattcattcattcat |
153 |
Q |
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| T |
40313844 |
aacacaagaattaatcttgttactaataatttacatatgatattacataaatttcaatgtcctccacctgatatgatatctctaggattcattcat---- |
40313749 |
T |
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| Q |
154 |
attcagagtgtcttgaaatttgtgcaacagaataagactttagagtcaaatattattattagaacaaaaggatctagaaaaagatatggtcttattttgt |
253 |
Q |
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| T |
40313748 |
attcagagtgtcttgaaatttgtgcaacagaataagactttagagtcaaatattattattagaacaaaaggatctagaaaaagatatggtcttattttgt |
40313649 |
T |
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| Q |
254 |
cggcattttctgtccttttggcttcctcatccattaattttgctacactttattcatcatgttcatatgttactttaatttggtggactaggaaccatgc |
353 |
Q |
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| T |
40313648 |
cggcattttctgtccttttggcttcctcatccattaattttgctacactttattcatcatgttcatatgttactttaatttggtggactaggaaccatgc |
40313549 |
T |
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| Q |
354 |
catagaacagatagaatcccttcattcaaaccatcgatcannnnnnnnatttattcctgcataacataacacccttc |
430 |
Q |
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| T |
40313548 |
catagaacagatagaatcccttcattcaaaccatcgatcattttatttatttattcctgcataacataacacccttc |
40313472 |
T |
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