View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF19475_high_29 (Length: 440)
Name: NF19475_high_29
Description: NF19475
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19475_high_29 |
 | |
|
Alignment Details
Target: chr2 (Bit Score: 217; Significance: 1e-119; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 217; E-Value: 1e-119
Query Start/End: Original strand, 101 - 391
Target Start/End: Original strand, 32437179 - 32437462
Alignment:
| Q |
101 |
aaatagaacattaactagatgacaaacattttaatcaggattgaattatatgattagttttatcaagacacaaacatattttgttgctcacaatttcaaa |
200 |
Q |
| |
|
||||||||||| ||||||| || | |||| |||||||||||||||||||||||||||||||||||||| ||||| ||||||||||| |||||||||||| |
|
|
| T |
32437179 |
aaatagaacatcaactagaagatacacatcttaatcaggattgaattatatgattagttttatcaagagacaaatatattttgttgtccacaatttcaaa |
32437278 |
T |
|
| Q |
201 |
atttcatgtcaataaccatatctttaattcttaatttcatccatcttgaattgaagaccatatttattttgagacgacatgagttggattaaagtaaata |
300 |
Q |
| |
|
|||||||| ||||||||||||||||||||| || |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
32437279 |
atttcatgccaataaccatatctttaattc-------cacccatcttgaattgaagaccatatttattttgagacgacatgagttggattaaagtaaata |
32437371 |
T |
|
| Q |
301 |
ttgagataaaatagccaaaccttgtcattgaagtaacttcttttgtgtgctcacaaggtttattttacatgaaaaaagatacaagataaag |
391 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |
|
|
| T |
32437372 |
ttgagataaaatagccaaaccttgtcattgaagtaacttcttttgtgtgctcacaaggtttattttacatgaaaaaacatacaagataaag |
32437462 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 149 - 194
Target Start/End: Original strand, 32444102 - 32444147
Alignment:
| Q |
149 |
tatgattagttttatcaagacacaaacatattttgttgctcacaat |
194 |
Q |
| |
|
|||||||||||||||||||| ||||||| | ||||||||||||||| |
|
|
| T |
32444102 |
tatgattagttttatcaagagacaaacaaagtttgttgctcacaat |
32444147 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University