View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF19475_high_3 (Length: 666)

Name: NF19475_high_3
Description: NF19475
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF19475_high_3
NF19475_high_3
[»] chr6 (4 HSPs)
chr6 (385-649)||(30520092-30520368)
chr6 (385-421)||(30519980-30520016)
chr6 (591-652)||(20528683-20528742)
chr6 (619-652)||(16488982-16489015)
[»] chr7 (5 HSPs)
chr7 (184-277)||(33320203-33320296)
chr7 (478-580)||(40497963-40498066)
chr7 (591-652)||(39318796-39318855)
chr7 (406-441)||(39318636-39318671)
chr7 (607-652)||(40497880-40497925)
[»] chr1 (1 HSPs)
chr1 (412-533)||(47369712-47369833)
[»] chr4 (4 HSPs)
chr4 (591-652)||(37390006-37390065)
chr4 (591-652)||(4254350-4254409)
chr4 (406-441)||(1196180-1196215)
chr4 (412-441)||(37390191-37390220)
[»] chr3 (1 HSPs)
chr3 (591-652)||(21897320-21897379)
[»] chr5 (1 HSPs)
chr5 (619-652)||(21813895-21813928)


Alignment Details
Target: chr6 (Bit Score: 183; Significance: 1e-98; HSPs: 4)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 183; E-Value: 1e-98
Query Start/End: Original strand, 385 - 649
Target Start/End: Original strand, 30520092 - 30520368
Alignment:
Q  385 attggaaaagtaattttttatttgtgcatagtgaaaaaatgagttgtatttaaatgaaaatgtcaatatttatatattagtagtaannnnnnnatgtaag 484  Q
    ||||||||| | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||       |||||||    
T  30520092 attggaaaaattattttttatttgtgcatagtgaaaaaatgagttgtatttaaatgaaaatgtcaatatttatatattagtagtaatttttttatgtaag 30520191  T
Q  485 tctaatgagtggtatagatatgatagtaagtgaatttaaaaataaaaggcaatattaaattattataagaagtaaatacaaaaatatttcatagacagag 584  Q
    |||||||||| |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| ||||||||||||||||||||   ||    
T  30520192 tctaatgagtcgtatagatatgatagtaagtgaatttaaaaataaaaggaaatattaaattattataagaagtacatacaaaaatatttcatagatgaag 30520291  T
Q  585 atccag------------aataaaaatagtagacttttttaatatcatctagttaatctaaatacaataatgatgtt 649  Q
    ||||||            |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  30520292 atccagaataaaaatagtaataaaaatagtagacttttttaatatcatctagttaatctaaatacaataatgatgtt 30520368  T

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Target: chr6; HSP #2
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 385 - 421
Target Start/End: Original strand, 30519980 - 30520016
Alignment:
Q  385 attggaaaagtaattttttatttgtgcatagtgaaaa 421  Q
    |||||||||||||||||||||||||||||||||||||    
T  30519980 attggaaaagtaattttttatttgtgcatagtgaaaa 30520016  T

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Target: chr6; HSP #3
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 591 - 652
Target Start/End: Original strand, 20528683 - 20528742
Alignment:
Q  591 aataaaaatagtagacttttttaatatcatctagttaatctaaatacaataatgatgttttt 652  Q
    ||||| ||||||||||||||  | |||  |||||||||||||||||||||||||||||||||    
T  20528683 aataagaatagtagactttt--agtattgtctagttaatctaaatacaataatgatgttttt 20528742  T

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Target: chr6; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 619 - 652
Target Start/End: Complemental strand, 16489015 - 16488982
Alignment:
Q  619 atctagttaatctaaatacaataatgatgttttt 652  Q
    |||||||||||||||||||||||| |||||||||    
T  16489015 atctagttaatctaaatacaataacgatgttttt 16488982  T

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Target: chr7 (Bit Score: 58; Significance: 5e-24; HSPs: 5)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 58; E-Value: 5e-24
Query Start/End: Original strand, 184 - 277
Target Start/End: Complemental strand, 33320296 - 33320203
Alignment:
Q  184 actcacaccctctaaagccacacctacctccttccttccctaccaagacataagatggggttctaattccattcgtaaaaaaggcaaaccggaa 277  Q
    |||||||||| | |||||| ||||||||||||||||| ||||| ||||||||||||||||||| |||||||||||||||| || ||||| ||||    
T  33320296 actcacacccaccaaagccgcacctacctccttcctttcctacgaagacataagatggggttccaattccattcgtaaaagagccaaactggaa 33320203  T

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Target: chr7; HSP #2
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 478 - 580
Target Start/End: Complemental strand, 40498066 - 40497963
Alignment:
Q  478 atgtaagtctaatgagtggtatagatatgatagtaagtgaat-ttaaaaataaaaggcaatattaaattattataagaagtaaatacaaaaatatttcat 576  Q
    |||||||| |||| ||| |||||||| ||||||||||||||  || |||| ||||||||||||||| | ||| |||| | || ||| |||||||||||||    
T  40498066 atgtaagtgtaattagttgtatagatttgatagtaagtgaaactttaaaagaaaaggcaatattaattaattttaaggaatacatagaaaaatatttcat 40497967  T
Q  577 agac 580  Q
    ||||    
T  40497966 agac 40497963  T

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Target: chr7; HSP #3
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 591 - 652
Target Start/End: Original strand, 39318796 - 39318855
Alignment:
Q  591 aataaaaatagtagacttttttaatatcatctagttaatctaaatacaataatgatgttttt 652  Q
    ||||| |||||||||  |||||| |||| ||||||||||||||||| |||||||||||||||    
T  39318796 aataagaatagtaga--tttttagtatcgtctagttaatctaaatataataatgatgttttt 39318855  T

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Target: chr7; HSP #4
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 406 - 441
Target Start/End: Original strand, 39318636 - 39318671
Alignment:
Q  406 ttgtgcatagtgaaaaaatgagttgtatttaaatga 441  Q
    ||||| ||||||||||||||||||||||||||||||    
T  39318636 ttgtggatagtgaaaaaatgagttgtatttaaatga 39318671  T

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Target: chr7; HSP #5
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 607 - 652
Target Start/End: Complemental strand, 40497925 - 40497880
Alignment:
Q  607 ttttttaatatcatctagttaatctaaatacaataatgatgttttt 652  Q
    ||||||| |||| ||||| ||||||||||||||||| |||||||||    
T  40497925 ttttttagtatcgtctagataatctaaatacaataacgatgttttt 40497880  T

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Target: chr1 (Bit Score: 57; Significance: 2e-23; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 57; E-Value: 2e-23
Query Start/End: Original strand, 412 - 533
Target Start/End: Complemental strand, 47369833 - 47369712
Alignment:
Q  412 atagtgaaaaaatgagttgtatttaaatgaaaatgtcaatatttatatattagtagtaannnnnnnatgtaagtctaatgagtggtatagatatgatagt 511  Q
    |||||||||||||||||| ||||||||| | ||| | ||||||||||||| ||||||||       ||| ||||||||||||| ||||||| ||||||||    
T  47369833 atagtgaaaaaatgagttctatttaaattagaatattaatatttatatatcagtagtaattatttgatgaaagtctaatgagttgtatagagatgatagt 47369734  T
Q  512 aagtgaatttaaaaataaaagg 533  Q
    ||||||| ||||||| ||||||    
T  47369733 aagtgaaattaaaaagaaaagg 47369712  T

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Target: chr4 (Bit Score: 39; Significance: 0.000000000001; HSPs: 4)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 591 - 652
Target Start/End: Complemental strand, 37390065 - 37390006
Alignment:
Q  591 aataaaaatagtagacttttttaatatcatctagttaatctaaatacaataatgatgttttt 652  Q
    ||||| |||||||||  |||||| |||| |||||||||||||||||||||||||||||||||    
T  37390065 aataataatagtaga--tttttagtatcgtctagttaatctaaatacaataatgatgttttt 37390006  T

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Target: chr4; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 591 - 652
Target Start/End: Original strand, 4254350 - 4254409
Alignment:
Q  591 aataaaaatagtagacttttttaatatcatctagttaatctaaatacaataatgatgttttt 652  Q
    ||||| ||||||||||||||  |||||  |||||||||||||||||||| ||||||||||||    
T  4254350 aataagaatagtagactttt--aatattgtctagttaatctaaatacaaaaatgatgttttt 4254409  T

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Target: chr4; HSP #3
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 406 - 441
Target Start/End: Complemental strand, 1196215 - 1196180
Alignment:
Q  406 ttgtgcatagtgaaaaaatgagttgtatttaaatga 441  Q
    ||||| ||||||||||||||||||||||||||||||    
T  1196215 ttgtggatagtgaaaaaatgagttgtatttaaatga 1196180  T

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Target: chr4; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 412 - 441
Target Start/End: Complemental strand, 37390220 - 37390191
Alignment:
Q  412 atagtgaaaaaatgagttgtatttaaatga 441  Q
    ||||||||||||||||||||||||||||||    
T  37390220 atagtgaaaaaatgagttgtatttaaatga 37390191  T

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Target: chr3 (Bit Score: 39; Significance: 0.000000000001; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 591 - 652
Target Start/End: Original strand, 21897320 - 21897379
Alignment:
Q  591 aataaaaatagtagacttttttaatatcatctagttaatctaaatacaataatgatgttttt 652  Q
    ||||| ||||||||||||||  |||||  |||||||||||||||||||||||||||||||||    
T  21897320 aataagaatagtagactttt--aatattgtctagttaatctaaatacaataatgatgttttt 21897379  T

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Target: chr5 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 619 - 652
Target Start/End: Original strand, 21813895 - 21813928
Alignment:
Q  619 atctagttaatctaaatacaataatgatgttttt 652  Q
    |||||||||||||||||||||||| |||||||||    
T  21813895 atctagttaatctaaatacaataacgatgttttt 21813928  T

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