View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19475_high_34 (Length: 417)
Name: NF19475_high_34
Description: NF19475
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19475_high_34 |
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Alignment Details
Target: chr1 (Bit Score: 355; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 355; E-Value: 0
Query Start/End: Original strand, 1 - 403
Target Start/End: Original strand, 46807538 - 46807953
Alignment:
| Q |
1 |
tagttgcttcactcacatgcataaaatgataaaaattcaa-----------aactctcttttctgaaagaatgtccaggttcatcaaattaaaacaa--c |
87 |
Q |
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|||||||||||||||||||||||||||||||||||||||| ||||| |||||||||||||||||||||||||||||||||||||||| | |
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| T |
46807538 |
tagttgcttcactcacatgcataaaatgataaaaattcaaccagtagcgaaaactcacttttctgaaagaatgtccaggttcatcaaattaaaacaaaac |
46807637 |
T |
|
| Q |
88 |
ttcacaaactcaaaagttcagtacacagatcatgatcgccgcatccatgtaaattcaaatggattggaccccaaattccatgcgttaaaacacgtacgca |
187 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
46807638 |
ttcacaaactcaaaagttcagtacacagatcatgatcgccgcatccatgtaaattcaaatggattggaccccaaattccatgcgttaaaacacgtacgca |
46807737 |
T |
|
| Q |
188 |
cccaatgtgtcatccatgcagcccaaactgttcataacctaatgaaactagccaaattcctcaattttgttcatttcaacactcgtcaagctacatgaca |
287 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |
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| T |
46807738 |
cccaatgtgtcatccatgcagcccaaactgttcataacctaatgaaactagccaaattcctcaattttgttcatttcaacactcgtcaacctacatgaca |
46807837 |
T |
|
| Q |
288 |
cattgtgtccaaatgtctatgcaagttattcttctagctctatcttctctgactataaatatttcttatctcattctttatttcatcatccaaagtgaaa |
387 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |
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| T |
46807838 |
cattgtgtccaaatgtctatgcaagttattcttctagctctatcttctctgactataaatattccttatctcattctttatttcatcatccaaagtgaaa |
46807937 |
T |
|
| Q |
388 |
aattcaaatcatggct |
403 |
Q |
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|||||||||||||||| |
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| T |
46807938 |
aattcaaatcatggct |
46807953 |
T |
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