View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF19475_high_4 (Length: 660)
Name: NF19475_high_4
Description: NF19475
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19475_high_4 |
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Alignment Details
Target: chr5 (Bit Score: 487; Significance: 0; HSPs: 5)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 487; E-Value: 0
Query Start/End: Original strand, 38 - 616
Target Start/End: Original strand, 33355016 - 33355594
Alignment:
| Q |
38 |
gtaaaaacaatcatacccgttgaagtcatccatgcccattggaaagggatagtagtggtgccacggcacgacaacgggtggcagggaaggagaggatctc |
137 |
Q |
| |
|
|||||||||||||||||| ||||||||||||||||||||||||||| ||||||||||||||| | |||||||||||||||| |||||||||||||||||| |
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| T |
33355016 |
gtaaaaacaatcatacccattgaagtcatccatgcccattggaaagtgatagtagtggtgcctcagcacgacaacgggtggaagggaaggagaggatctc |
33355115 |
T |
|
| Q |
138 |
ggagatccagaatcataaggtgggaggtccctgtactaaacaaaaattaagctcagtcataatcaaacaagggtaaaaatggattctaacaacgattgtt |
237 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||| |||||||||||||||||| ||||| |||||||||||||||||||||||||| |||||||||| |
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| T |
33355116 |
ggagatccagaatcataaggtgggaggtccctgtaccaaacaaaaattaagctcaatcatactcaaacaagggtaaaaatggattctagaaacgattgtt |
33355215 |
T |
|
| Q |
238 |
atgaatatttaagagtaagttttagggttttagagagaagataattgttgaaataattaagtgattctcagtccaagcttaaatacaactaaaatagtta |
337 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |
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| T |
33355216 |
atgaatatttaagagtaagttttagggttttagagagaagataattgttgaaataattgagtgattctcagtccaagcttaaatacaactaaaatagtta |
33355315 |
T |
|
| Q |
338 |
aatgataaaaagaacttactccatggggatccggcagtgggaataataataagaagacgacgaaaacaacaggtggtggtagtagtcgtgaggagcaatt |
437 |
Q |
| |
|
||||||| | | |||||||||||| |||||| | ||| |||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |
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| T |
33355316 |
aatgatatagataacttactccatagggatctgacagagggaataataataagaagacgacgaaaacaacaggtggtggtggtagtcgtgaggagcaatt |
33355415 |
T |
|
| Q |
438 |
gcgtttctttaagaatcaatttcaatctctgccaagatcttcaactctcttccatcgagttggaatccctcaaaccagaaatagtaggtggtgttcataa |
537 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| | |||||||||||||||| |
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| T |
33355416 |
gcgtttctttaagaatcaatttcaatctctgccaagatcttcaactctcttctatcgagttggaatccctcaaaccagaaacaataggtggtgttcataa |
33355515 |
T |
|
| Q |
538 |
agtgcttactaaaatgatttttaccacacatgatatgtgcgtgcgtgcgcgcaagtgcgtgcatgcgtgtgttgtttat |
616 |
Q |
| |
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|| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
33355516 |
agagcttactaaaatgatttttaccacacatgatatgtgcgtgcgtgcgcgcaagtgcgtgcatgcgtgtgttgtttat |
33355594 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 432; E-Value: 0
Query Start/End: Original strand, 36 - 616
Target Start/End: Complemental strand, 33548377 - 33547806
Alignment:
| Q |
36 |
tggtaaaaacaatcatacccgttgaagtcatccatgcccattggaaagggatagtagtggtgccacggcacgacaacgggtggcagggaaggagaggatc |
135 |
Q |
| |
|
|||||||||||||||||| ||||||||||||||||||||||||||||| |||||||| |||||| |||||||||||||||||||||||||||||| || |
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|
| T |
33548377 |
tggtaaaaacaatcatacacgttgaagtcatccatgcccattggaaagtgatagtagcggtgcctcggcacgacaacgggtggcagggaaggaga---tc |
33548281 |
T |
|
| Q |
136 |
tcggagatccagaatcataaggtgggaggtccctgtactaaacaaaaattaagctcagtcataatcaaacaagggtaaaaatggattctaacaacgattg |
235 |
Q |
| |
|
||||||||||||||||||||||||||||||| |||||| |||||||||||||||||| |||||||||||||||||||||||||||||||| ||||||||| |
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| T |
33548280 |
tcggagatccagaatcataaggtgggaggtctctgtaccaaacaaaaattaagctcaatcataatcaaacaagggtaaaaatggattctagcaacgattg |
33548181 |
T |
|
| Q |
236 |
ttatgaatatttaagagtaagttttagggttttagagagaagataattgttgaaataattaagtgattctcagtccaagcttaaatacaactaaaatagt |
335 |
Q |
| |
|
|| ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| ||||||||||||||||||||||||||||||||||||||| |
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| T |
33548180 |
ttgtgaatatttaagagtaagttttagggttttagagagaagataattgttgaactaattgagtgattctcagtccaagcttaaatacaactaaaatagt |
33548081 |
T |
|
| Q |
336 |
taaatgataaaaagaacttactccatggggatccggcagtgggaataataataagaagacgacgaaaacaacaggtggtggtagtagtcgtgaggagcaa |
435 |
Q |
| |
|
||||||||| |||||||||||||||| |||||||||| | ||||| |||||||| | ||| ||||||||||||||||||||||||||||||||||||||| |
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|
| T |
33548080 |
taaatgatagaaagaacttactccatagggatccggcggagggaaaaataataaaacgacaacgaaaacaacaggtggtggtagtagtcgtgaggagcaa |
33547981 |
T |
|
| Q |
436 |
ttgcgtttctttaagaatcaatttcaatctctgccaagatcttcaactctcttccatcgagttggaatccctcaaaccagaaatagtaggtggtgttcat |
535 |
Q |
| |
|
|||||||||||||||||||| ||||||||||||||||||||||||||| ||||| |||||||||||||||||||||||||||| | || |||||| |
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|
| T |
33547980 |
ttgcgtttctttaagaatcagtttcaatctctgccaagatcttcaactatcttctatcgagttggaatccctcaaaccagaaacaata------gttcat |
33547887 |
T |
|
| Q |
536 |
aaagtgcttactaaaatgatttttaccacacatgatatgtgcgtgcgtgcgcgcaagtgcgtgcatgcgtgtgttgtttat |
616 |
Q |
| |
|
|||| |||||||||||||||||||||||||||||||||||| |||||| || ||||||||||||||||||||||||||||| |
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|
| T |
33547886 |
aaagagcttactaaaatgatttttaccacacatgatatgtgtgtgcgttcgtgcaagtgcgtgcatgcgtgtgttgtttat |
33547806 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 291; E-Value: 1e-163
Query Start/End: Original strand, 36 - 366
Target Start/End: Complemental strand, 33547378 - 33547048
Alignment:
| Q |
36 |
tggtaaaaacaatcatacccgttgaagtcatccatgcccattggaaagggatagtagtggtgccacggcacgacaacgggtggcagggaaggagaggatc |
135 |
Q |
| |
|
|||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |||||||||||||||||||||| |
|
|
| T |
33547378 |
tggtaaaaacaaccatacccgttgaagtcatccatgcccattggaaagggatagtagtggtgcctcggcacgacaacaggtggcagggaaggagaggatc |
33547279 |
T |
|
| Q |
136 |
tcggagatccagaatcataaggtgggaggtccctgtactaaacaaaaattaagctcagtcataatcaaacaagggtaaaaatggattctaacaacgattg |
235 |
Q |
| |
|
||||||||||||||||||||||||||||||| |||||| |||||||||||||||||| |||||||||||||||||||||||||||||||| ||||||||| |
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| T |
33547278 |
tcggagatccagaatcataaggtgggaggtctctgtaccaaacaaaaattaagctcaatcataatcaaacaagggtaaaaatggattctagcaacgattg |
33547179 |
T |
|
| Q |
236 |
ttatgaatatttaagagtaagttttagggttttagagagaagataattgttgaaataattaagtgattctcagtccaagcttaaatacaactaaaatagt |
335 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |
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|
| T |
33547178 |
ttatgaatatttaagagtaagttttagggttttagagagaagataattgttgaaataattgagtgattctcagtccaagcttaaatacaactaaaatagt |
33547079 |
T |
|
| Q |
336 |
taaatgataaaaagaacttactccatgggga |
366 |
Q |
| |
|
||||||||| |||||||||||||||| |||| |
|
|
| T |
33547078 |
taaatgatataaagaacttactccataggga |
33547048 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 163; E-Value: 1e-86
Query Start/End: Original strand, 426 - 616
Target Start/End: Complemental strand, 33544183 - 33543993
Alignment:
| Q |
426 |
tgaggagcaattgcgtttctttaagaatcaatttcaatctctgccaagatcttcaactctcttccatcgagttggaatccctcaaaccagaaatagtagg |
525 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| | || | |
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|
| T |
33544183 |
tgaggagcaattgcgtttctttaagaatcaatttcaatctctgccaagatcttcaactctcttctatcgagttggaatccctcaaaccagaaacaatacg |
33544084 |
T |
|
| Q |
526 |
tggtgttcataaagtgcttactaaaatgatttttaccacacatgatatgtgcgtgcgtgcgcgcaagtgcgtgcatgcgtgtgttgtttat |
616 |
Q |
| |
|
|||||||||||||| |||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |||||||| |
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|
| T |
33544083 |
tggtgttcataaagagcttactaaaatgatttttaccacacatgatatgtgtgtgcgtgcgcgcaagtgcgtgcatgcgtgttttgtttat |
33543993 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 152; E-Value: 4e-80
Query Start/End: Original strand, 406 - 616
Target Start/End: Complemental strand, 33547048 - 33546844
Alignment:
| Q |
406 |
acaggtggtggtagtagtcgtgaggagcaattgcgtttctttaagaatcaatttcaatctctgccaagatcttcaactctcttccatcgagttggaatcc |
505 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| ||||||||||||||| |
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|
| T |
33547048 |
acaggtggtggtagtagtcgtgaggagcaattgcgtttctttaagaaccaatttcaatctctgccaagatcttcaactctcttctatcgagttggaatcc |
33546949 |
T |
|
| Q |
506 |
ctcaaaccagaaatagtaggtggtgttcataaagtgcttactaaaatgatttttaccacacatgatatgtgcgtgcgtgcgcgcaagtgcgtgcatgcgt |
605 |
Q |
| |
|
||||||| ||||| | || |||||||||| |||||||||||| ||||||||||||||||||||||| |||||||||||||||||||||||||||| |
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|
| T |
33546948 |
ctcaaactagaaacaata------gttcataaagagcttactaaaataatttttaccacacatgatatgtgtgtgcgtgcgcgcaagtgcgtgcatgcgt |
33546855 |
T |
|
| Q |
606 |
gtgttgtttat |
616 |
Q |
| |
|
|||||| |||| |
|
|
| T |
33546854 |
gtgttgcttat |
33546844 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 39; Significance: 0.000000000001; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 232 - 291
Target Start/End: Original strand, 28105082 - 28105143
Alignment:
| Q |
232 |
attgttatgaatatttaagagtaag--ttttagggttttagagagaagataattgttgaaat |
291 |
Q |
| |
|
||||||||||| |||| |||||||| ||||||||||||||||||||||||||| ||||||| |
|
|
| T |
28105082 |
attgttatgaacatttgagagtaagagttttagggttttagagagaagataattattgaaat |
28105143 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 232 - 283
Target Start/End: Complemental strand, 27967661 - 27967608
Alignment:
| Q |
232 |
attgttatgaatatttaagagtaag--ttttagggttttagagagaagataatt |
283 |
Q |
| |
|
||||||||||| |||| |||||||| |||| |||||||||||||||||||||| |
|
|
| T |
27967661 |
attgttatgaacatttgagagtaagagtttttgggttttagagagaagataatt |
27967608 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 39; Significance: 0.000000000001; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 232 - 291
Target Start/End: Original strand, 31297577 - 31297638
Alignment:
| Q |
232 |
attgttatgaatatttaagagtaag--ttttagggttttagagagaagataattgttgaaat |
291 |
Q |
| |
|
||||| |||||||||| |||| ||| ||||||||||||||||||||||||||||||||||| |
|
|
| T |
31297577 |
attgtcatgaatatttgagagcaagagttttagggttttagagagaagataattgttgaaat |
31297638 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 430 - 516
Target Start/End: Original strand, 52862460 - 52862545
Alignment:
| Q |
430 |
gagcaattgcgtttctttaagaatcaatttcaatctctgccaa-gatcttcaactctcttccatcgagttggaatccctcaaaccaga |
516 |
Q |
| |
|
|||||| ||||||||||| |||| ||||||||||| ||||| ||| ||||||||||||| || |||||||||||||| ||| |||| |
|
|
| T |
52862460 |
gagcaactgcgtttctttgtgaatgaatttcaatct--gccaatgatgttcaactctcttctatagagttggaatccctgaaagcaga |
52862545 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 35; Significance: 0.0000000002; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 255 - 289
Target Start/End: Original strand, 26371092 - 26371126
Alignment:
| Q |
255 |
agttttagggttttagagagaagataattgttgaa |
289 |
Q |
| |
|
||||||||||||||||||||||||||||||||||| |
|
|
| T |
26371092 |
agttttagggttttagagagaagataattgttgaa |
26371126 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 29; Significance: 0.0000009; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 264 - 292
Target Start/End: Original strand, 55287145 - 55287173
Alignment:
| Q |
264 |
gttttagagagaagataattgttgaaata |
292 |
Q |
| |
|
||||||||||||||||||||||||||||| |
|
|
| T |
55287145 |
gttttagagagaagataattgttgaaata |
55287173 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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