View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF19475_high_42 (Length: 382)
Name: NF19475_high_42
Description: NF19475
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19475_high_42 |
 | |
|
Alignment Details
Target: chr2 (Bit Score: 280; Significance: 1e-157; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 280; E-Value: 1e-157
Query Start/End: Original strand, 1 - 368
Target Start/End: Complemental strand, 32801840 - 32801473
Alignment:
| Q |
1 |
agggctattggttgcagccgcatgagctgctgcagcaagaagtcccaagtgcatactatcagttgacaatactaaggaaggcatcacagtttgtggccag |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| ||||||||||| |||||||||| ||| |
|
|
| T |
32801840 |
agggctattggttgcagccgcatgagctgctgcagcaagaagtcccaagtgcgtactatcagttgacaatactgaggaaggcatcgcagtttgtggtcag |
32801741 |
T |
|
| Q |
101 |
ctggcatggcggataccaaaaagcaattggttcttttcattcctattgaagaagatgcacttgagttgcaccgtagataagatatcacataatcgcatac |
200 |
Q |
| |
|
|| ||| |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| ||| | |||||||||||||||||||| |||| |
|
|
| T |
32801740 |
ctagcacggcggataccaagaagcaattggttcttttcattcctattgaagaagatgcacttgagttggaccattgataagatatcacataatcgtatac |
32801641 |
T |
|
| Q |
201 |
ataccaaaaaattaacaattctcgtggatcatcatcataataaagtaagaagatgnnnnnnnntcgaatcaacgaacacttctctaagcctgaaccactt |
300 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||| ||||||||||||||| ||||||||||||||||||||||||||||||| ||||| |
|
|
| T |
32801640 |
ataccaaaaaattaacaattctcgtggatcatcatcatagtaaagtaagaagatgaaaaaaaatcgaatcaacgaacacttctctaagcctgaagcactt |
32801541 |
T |
|
| Q |
301 |
gtcatgaagaatgttttagtattgaaagcatgatatatccaaggtgaatcaatagaccaaattaatga |
368 |
Q |
| |
|
|||| ||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |
|
|
| T |
32801540 |
atcattaagaatgttttagtattgaaagcatgatatatccaaggtgaatgaatagaccaaattaatga |
32801473 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 187; E-Value: 1e-101
Query Start/End: Original strand, 3 - 370
Target Start/End: Original strand, 5909409 - 5909773
Alignment:
| Q |
3 |
ggctattggttgcagccgcatgagctgctgcagcaagaagtcccaagtgcatactatcagttgacaatactaaggaaggcatcacagtttgtggccagct |
102 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |||||||||||||||||||||| | ||| |
|
|
| T |
5909409 |
ggctattggttgcagccgcatgagctgctgcagcaagaagtcccaagtgcatactatcacttgacaatactgaggaaggcatcacagtttgtggtcggct |
5909508 |
T |
|
| Q |
103 |
ggcatggcggataccaaaaagcaattggttcttttcattcctattgaagaagatgcacttgagttgcaccgtagataagatatcacataatcgcatacat |
202 |
Q |
| |
|
||| |||| ||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |||| | ||||||||||||||||||| ||||||| |
|
|
| T |
5909509 |
agcacggcgaataccaagaagcaattggttcttttcattcctattgaagaagatgcacttgagttacaccattgataagatatcacataatcacatacat |
5909608 |
T |
|
| Q |
203 |
accaaaaaattaacaattctcgtggatcatcatcataataaagtaagaagatgnnnnnnnntcgaatcaacgaacacttctctaagc-ctgaaccacttg |
301 |
Q |
| |
|
||| |||||| ||||||||||||| ||||||||||||||||||| ||||| |||| ||| ||| ||||| |||| ||||| |||||| |
|
|
| T |
5909609 |
accgaaaaatcaacaattctcgtg---tatcatcataataaagtaagcagatgcgaaaaataagaataaac-cacatttctcaaagcactgaagcacttg |
5909704 |
T |
|
| Q |
302 |
tcatgaagaatgttttagtattgaaagcatgatatatccaaggtgaatcaatagaccaaattaatgatg |
370 |
Q |
| |
|
||| ||||||||||||||||||||| ||||| | ||||||||| || |||||| ||||||||||||| |
|
|
| T |
5909705 |
tcagtaagaatgttttagtattgaaaacatgacagatccaaggtaaaggaatagaacaaattaatgatg |
5909773 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 151; Significance: 8e-80; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 151; E-Value: 8e-80
Query Start/End: Original strand, 1 - 183
Target Start/End: Original strand, 31784878 - 31785060
Alignment:
| Q |
1 |
agggctattggttgcagccgcatgagctgctgcagcaagaagtcccaagtgcatactatcagttgacaatactaaggaaggcatcacagtttgtggccag |
100 |
Q |
| |
|
|||||||||||||||||||||||||||| |||||||||||||||||||||||| ||||||||||||||||||| |||||||||| ||||||||||||||| |
|
|
| T |
31784878 |
agggctattggttgcagccgcatgagctactgcagcaagaagtcccaagtgcaaactatcagttgacaatactgaggaaggcattacagtttgtggccag |
31784977 |
T |
|
| Q |
101 |
ctggcatggcggataccaaaaagcaattggttcttttcattcctattgaagaagatgcacttgagttgcaccgtagataagat |
183 |
Q |
| |
|
| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |||||||| |
|
|
| T |
31784978 |
atagcatggcggataccaaaaagcaattggttcttttcattcctattgaagaagatgcacttgagttgcaccattgataagat |
31785060 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 94; E-Value: 9e-46
Query Start/End: Original strand, 227 - 368
Target Start/End: Original strand, 31785058 - 31785199
Alignment:
| Q |
227 |
gatcatcatcataataaagtaagaagatgnnnnnnnntcgaatcaacgaacacttctctaagcctgaaccacttgtcatgaagaatgttttagtattgaa |
326 |
Q |
| |
|
||||||||||||||||||||||||||||| | |||||||||||||||||||||||||| || |||||||||| |||||||||||||||||||| |
|
|
| T |
31785058 |
gatcatcatcataataaagtaagaagatgaaaaaaaattgaatcaacgaacacttctctaagcctaaagcacttgtcattaagaatgttttagtattgaa |
31785157 |
T |
|
| Q |
327 |
agcatgatatatccaaggtgaatcaatagaccaaattaatga |
368 |
Q |
| |
|
|||||||||||||||||||| || |||||||||||||||||| |
|
|
| T |
31785158 |
agcatgatatatccaaggtggatgaatagaccaaattaatga |
31785199 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 4 - 146
Target Start/End: Original strand, 32494661 - 32494803
Alignment:
| Q |
4 |
gctattggttgcagccgcatgagctgctgcagcaagaagtcccaagtgcatactatcagttgacaatactaaggaaggcatcacagtttgtggccagctg |
103 |
Q |
| |
|
|||||| ||||| || ||||| ||||| || ||||||||||| | |||||| |||||| |||| | ||| | || ||||| ||||||||||||| ||| |
|
|
| T |
32494661 |
gctattagttgctgcagcatgtgctgcagctgcaagaagtccaatgtgcatgctatcacttgaaagaactgatgatggcataacagtttgtggcctactg |
32494760 |
T |
|
| Q |
104 |
gcatggcggataccaaaaagcaattggttcttttcattcctat |
146 |
Q |
| |
|
||| | || || || ||||| | || |||||||||||||||| |
|
|
| T |
32494761 |
gcacgacgtattcccaaaagaagctgattcttttcattcctat |
32494803 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 41; Significance: 0.00000000000004; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 266 - 342
Target Start/End: Complemental strand, 17759321 - 17759246
Alignment:
| Q |
266 |
gaatcaacgaacacttctctaagcctgaaccacttgtcatgaagaatgttttagtattgaaagcatgatatatccaa |
342 |
Q |
| |
|
||||||||||| |||||| |||||||||| ||||||||| ||||||||||||||||||||| ||||| | |||||| |
|
|
| T |
17759321 |
gaatcaacgaa-acttctttaagcctgaagcacttgtcagtaagaatgttttagtattgaaaacatgacaaatccaa |
17759246 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 11 - 86
Target Start/End: Original strand, 34081596 - 34081671
Alignment:
| Q |
11 |
gttgcagccgcatgagctgctgcagcaagaagtcccaagtgcatactatcagttgacaatactaaggaaggcatca |
86 |
Q |
| |
|
|||||||| ||||||||||| |||||||| || ||||||||||| |||||| ||||||| ||| | |||||||||| |
|
|
| T |
34081596 |
gttgcagctgcatgagctgcagcagcaagcagccccaagtgcatgctatcacttgacaacactgatgaaggcatca |
34081671 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 20 - 80
Target Start/End: Original strand, 42567489 - 42567549
Alignment:
| Q |
20 |
gcatgagctgctgcagcaagaagtcccaagtgcatactatcagttgacaatactaaggaag |
80 |
Q |
| |
|
||||||||||||||||| || | ||| | ||||||||||||| |||||| |||| |||||| |
|
|
| T |
42567489 |
gcatgagctgctgcagccaggattccaatgtgcatactatcacttgacagtactgaggaag |
42567549 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University