View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19475_high_44 (Length: 372)
Name: NF19475_high_44
Description: NF19475
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19475_high_44 |
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Alignment Details
Target: chr3 (Bit Score: 315; Significance: 1e-177; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 315; E-Value: 1e-177
Query Start/End: Original strand, 12 - 357
Target Start/End: Original strand, 35212317 - 35212662
Alignment:
| Q |
12 |
aaatcacagtttaaggtgtaaaaccactttattttaaaaggaccataatagtaagtcatttgtaa-ctgtaagatatagtctgagatttgttagaattag |
110 |
Q |
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| T |
35212317 |
aaatcacagtttcaggtgtaaaaccactttagtttaaaaggaccataatagtaagtcatttgtaaactgtaagatatagtctgagatttgttagaattag |
35212416 |
T |
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| Q |
111 |
ttaagtttgttataggtagtttcaacttaaaaggttggttagtaacttagtattaattatttgttaacttagttatgatcaccatattaagtgtatagta |
210 |
Q |
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| T |
35212417 |
ttaagtttgttataggtagtttcaacttaaa-ggttggttagtaacttagtattaattatttgttaacttagttatgatcaccatattaagtgtatagta |
35212515 |
T |
|
| Q |
211 |
tacactacactccttgttatcaactttctgccattctatcaattccaagtaatcaatatttctctcaaattattttcctcttaggttggactctaccatt |
310 |
Q |
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| T |
35212516 |
tacactacactccttgttatcaactttctgtcattctatcaattccaagtaatcaatatttctctcaaattattttcctcttaggttggactctaccatt |
35212615 |
T |
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| Q |
311 |
cttctcattagtaacaatgaaaaattaaactattggtaaatgtttgt |
357 |
Q |
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| T |
35212616 |
cttctcattagtaacaatgaaaatttaaactattggtaaatgtttgt |
35212662 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 32; Significance: 0.000000008; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 242 - 317
Target Start/End: Complemental strand, 45518887 - 45518813
Alignment:
| Q |
242 |
cattctatcaattccaagtaatcaatatttctctcaaattattttcctcttaggttggactctaccattcttctca |
317 |
Q |
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| T |
45518887 |
cattctatcaatttcaaataatcaatctttctctcaatttatttttctctt-tgttgggctataccatgcttctca |
45518813 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 32; Significance: 0.000000008; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 242 - 285
Target Start/End: Complemental strand, 11708361 - 11708318
Alignment:
| Q |
242 |
cattctatcaattccaagtaatcaatatttctctcaaattattt |
285 |
Q |
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| T |
11708361 |
cattctatcaattccaaataatcaatctttctctcaatttattt |
11708318 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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