View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF19475_high_51 (Length: 345)
Name: NF19475_high_51
Description: NF19475
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19475_high_51 |
 | |
|
Alignment Details
Target: chr8 (Bit Score: 231; Significance: 1e-127; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 231; E-Value: 1e-127
Query Start/End: Original strand, 1 - 327
Target Start/End: Complemental strand, 43106625 - 43106290
Alignment:
| Q |
1 |
cttttataaaagagagcaatgatcgataaggaaagaggtgaagaattacaatgatactctaacccttctctctctgaatttcctttttctctgcccctag |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
43106625 |
cttttataaaagagagcaatgatcgataaggaaagaggtgaagaattacaatgatactctaacccttctctctctgaatttcctttttctctgcccctag |
43106526 |
T |
|
| Q |
101 |
tggtttctaatatcacatcacatagtattaacatttcttaatttcctctacataaactagnnnnnnnnnnnnnnnnnnngaggggaacataaactagttt |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |
|
|
| T |
43106525 |
tggtttctaatatcacatcacatagtattaacatttcttaatttcctctacataaactagttttttgtttttgttttttgaggggaacataaactagttt |
43106426 |
T |
|
| Q |
201 |
tataacacaattctcttttgtatgttgcatacaattctgactccataaaacaatttg---------aaactcttaattactagtatgaccataattttgc |
291 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||| ||||| |||||||| |||||||||||||||||||||||||||||||||| |
|
|
| T |
43106425 |
tataacacaattctcttttgtatgttgcatacaattctgactgcataacacaatttgaaactcttaaaactcttaattactagtatgaccataattttgc |
43106326 |
T |
|
| Q |
292 |
acctttcttatagcttaatcaagtaggtagcctaag |
327 |
Q |
| |
|
|||||||||| | ||||||||||||||||||||||| |
|
|
| T |
43106325 |
acctttcttacaacttaatcaagtaggtagcctaag |
43106290 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University