View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19475_high_55 (Length: 336)
Name: NF19475_high_55
Description: NF19475
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19475_high_55 |
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Alignment Details
Target: chr8 (Bit Score: 244; Significance: 1e-135; HSPs: 8)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 244; E-Value: 1e-135
Query Start/End: Original strand, 32 - 319
Target Start/End: Original strand, 6390267 - 6390554
Alignment:
| Q |
32 |
taactgtttccaacttattaatttaagttggttagagtttgttaatagatagttagcttattaatttcgtagtttctttgttcattctctatttctcgaa |
131 |
Q |
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| T |
6390267 |
taactatttcgaacttattaatttaagttggctagaatttgttaatagatagttagcttattaatttcgtagtttctttgttcattctctatttctctat |
6390366 |
T |
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| Q |
132 |
ggatacaaaacaaaactcttacatctaaactgacatctcatgggtgtaaaagattatttttgagatcaatatctttctaaaaatggactagacgaagatt |
231 |
Q |
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| T |
6390367 |
ggatacaaaacaaaactcttgcatctaaactgacatctcatgggtgtaaaagattatttttgagatcaatgtctttctaaaaatggactagacgacgatg |
6390466 |
T |
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| Q |
232 |
taataatttgtaaggtcaccttttgattagatcattaggtagtccttgatcttggaaaacccaatccttgtaaacatcagaagacaat |
319 |
Q |
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| T |
6390467 |
taataatttgtaaggtcaccttttgattagatcattaggtagtccttgatcttggaaaacccaatccttgtaaacttcagaagacaat |
6390554 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 171; E-Value: 8e-92
Query Start/End: Original strand, 88 - 319
Target Start/End: Original strand, 6409532 - 6409759
Alignment:
| Q |
88 |
cttattaatttcgtagtttctttgttcattctctatttctcgaaggatacaaaacaaaactcttacatctaaactgacatctcatgggtgtaaaagatta |
187 |
Q |
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| T |
6409532 |
cttattaatttcgtagttgctttgttcattctctatttctctaaggatacaaaacaaaactc----atctaaactgacatctcatgcgtgtaaaagatta |
6409627 |
T |
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| Q |
188 |
tttttgagatcaatatctttctaaaaatggactagacgaagatttaataatttgtaaggtcaccttttgattagatcattaggtagtccttgatcttgga |
287 |
Q |
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| T |
6409628 |
tttttgagatcaatgtctttctaaaaatggacaagacgaagatttaatattttgtaagcttaccttttgattagatcattaggtagtgcttgatccggga |
6409727 |
T |
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| Q |
288 |
aaacccaatccttgtaaacatcagaagacaat |
319 |
Q |
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| T |
6409728 |
aaacccaatccttgtaaacatcagaagacaat |
6409759 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 191 - 317
Target Start/End: Original strand, 6362628 - 6362755
Alignment:
| Q |
191 |
ttgagatcaatatctttctaaaaat-ggact-agacgaagatttaataatttgtaaggtcaccttttgattagatcattaggtagtccttgatcttggaa |
288 |
Q |
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| T |
6362628 |
ttgagatcaatatctttttaaaaaacggactgagtc-aagatgtaatgttttgtaaggttaccttttgattagatcattaggtaggccttgctcagtgaa |
6362726 |
T |
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| Q |
289 |
aacccaatccttgtaaacatcagaagaca |
317 |
Q |
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| T |
6362727 |
aacccaatccttgtaaacgacagaagaca |
6362755 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 243 - 300
Target Start/End: Original strand, 6320882 - 6320939
Alignment:
| Q |
243 |
aaggtcaccttttgattagatcattaggtagtccttgatcttggaaaacccaatcctt |
300 |
Q |
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| T |
6320882 |
aaggttaccttttaagtagatcattaggtagtccttgatctgggaaaacccaatcctt |
6320939 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 238 - 317
Target Start/End: Original strand, 7458566 - 7458645
Alignment:
| Q |
238 |
tttgtaaggtcaccttttgattagatcattaggtagtccttgatcttggaaaacccaatccttgtaaacatcagaagaca |
317 |
Q |
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| T |
7458566 |
tttgtaaggttaccttttgattagatcattaggaagtccttgctcggtgaaattccaatccttgtaaacaacagcagaca |
7458645 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #6
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 238 - 317
Target Start/End: Original strand, 7470968 - 7471047
Alignment:
| Q |
238 |
tttgtaaggtcaccttttgattagatcattaggtagtccttgatcttggaaaacccaatccttgtaaacatcagaagaca |
317 |
Q |
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| T |
7470968 |
tttgtaaggttaccttttgattagatcattaggaagtccttgctcagtgaaattccaatccttgtaaacaacagcagaca |
7471047 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #7
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 240 - 317
Target Start/End: Original strand, 6351745 - 6351822
Alignment:
| Q |
240 |
tgtaaggtcaccttttgattagatcattaggtagtccttgatcttggaaaacccaatccttgtaaacatcagaagaca |
317 |
Q |
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| T |
6351745 |
tgtaaggttaccttttgattagatcgttaggtagtccttgctcaatgaaattccaatccttgtaaacaacagcagaca |
6351822 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #8
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 238 - 298
Target Start/End: Original strand, 6423587 - 6423647
Alignment:
| Q |
238 |
tttgtaaggtcaccttttgattagatcattaggtagtccttgatcttggaaaacccaatcc |
298 |
Q |
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| T |
6423587 |
tttgtaatatcaccttttgagtagatcattaggtagcccttgctcagtgaaaacccaatcc |
6423647 |
T |
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