View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF19475_high_56 (Length: 333)

Name: NF19475_high_56
Description: NF19475
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF19475_high_56
NF19475_high_56
[»] chr1 (1 HSPs)
chr1 (19-312)||(45683971-45684265)


Alignment Details
Target: chr1 (Bit Score: 283; Significance: 1e-158; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 283; E-Value: 1e-158
Query Start/End: Original strand, 19 - 312
Target Start/End: Original strand, 45683971 - 45684265
Alignment:
Q  19 gatagaacatgcatatttgaccctcactgcgacctttttctgaaaattaccaaa-ccgaagggtatatgtaattctagtatatgtaatgagtctggcttt 117  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||    
T  45683971 gatagaacatgcatatttgaccctcactgcgacctttttctgaaaattaccaaaaccgaagggtatatgtaattctagtatatgtaatgagtctggcttt 45684070  T
Q  118 ttcaataatgaatttccaaacctgatgttttgattctaaaacagatgcaagttgtagatttaaagagcaccgaagggcccactatgatgaattccttcaa 217  Q
    |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  45684071 ttcaataatgaattaccaaacctgatgttttgattctaaaacagatgcaagttgtagatttaaagagcaccgaagggcccactatgatgaattccttcaa 45684170  T
Q  218 gttaaagaactgagaaagcaggctgctcttctagagaatggaagtgacaaggagaataatcgtaataccgtgcttgctgaggagaagaaatccga 312  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  45684171 gttaaagaactgagaaagcaggctgctcttctagagaatggaagtgacaaggagaataatcgtaataccgtgcttgctgaggagaagaaatccga 45684265  T

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