View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF19475_high_59 (Length: 294)

Name: NF19475_high_59
Description: NF19475
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF19475_high_59
NF19475_high_59
[»] chr4 (2 HSPs)
chr4 (13-294)||(18768778-18769059)
chr4 (230-290)||(18769201-18769261)
[»] chr2 (7 HSPs)
chr2 (201-294)||(15428659-15428752)
chr2 (229-291)||(41758678-41758741)
chr2 (240-294)||(17819961-17820016)
chr2 (229-291)||(33436046-33436109)
chr2 (231-291)||(17823879-17823940)
chr2 (231-291)||(28381603-28381664)
chr2 (231-291)||(30915554-30915615)
[»] chr3 (5 HSPs)
chr3 (202-294)||(25395253-25395345)
chr3 (230-294)||(1758404-1758468)
chr3 (207-291)||(30801657-30801742)
chr3 (207-291)||(20764839-20764924)
chr3 (231-291)||(21746136-21746197)
[»] chr6 (2 HSPs)
chr6 (230-294)||(9379659-9379724)
chr6 (207-294)||(31952954-31953042)
[»] chr8 (3 HSPs)
chr8 (68-167)||(4666784-4666881)
chr8 (207-291)||(5957921-5958006)
chr8 (231-291)||(42221606-42221667)
[»] chr5 (1 HSPs)
chr5 (207-294)||(6679786-6679874)
[»] chr7 (4 HSPs)
chr7 (229-294)||(4999460-4999526)
chr7 (207-288)||(41423776-41423858)
chr7 (229-268)||(36362128-36362168)
chr7 (231-286)||(38044293-38044349)
[»] scaffold0110 (1 HSPs)
scaffold0110 (207-290)||(8787-8871)
[»] chr1 (1 HSPs)
chr1 (207-294)||(45044484-45044572)


Alignment Details
Target: chr4 (Bit Score: 278; Significance: 1e-155; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 278; E-Value: 1e-155
Query Start/End: Original strand, 13 - 294
Target Start/End: Original strand, 18768778 - 18769059
Alignment:
Q  13 aatatcacattcatgatgtcattttttatttcatgttgtttcaggagatatagaaaaatgttatttaaacaaccaaagcttgataacttaattcacaact 112  Q
    ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  18768778 aatatcacattcatgatgtcattttttatttcatgttgtctcaggagatatagaaaaatgttatttaaacaaccaaagcttgataacttaattcacaact 18768877  T
Q  113 atataaaaacatactatttttataactataaatttgactcgaggagagagaaaaactaatcaaaaatgatgttgtatctataaataaggaatagtgttac 212  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  18768878 atataaaaacatactatttttataactataaatttgactcgaggagagagaaaaactaatcaaaaatgatgttgtatctataaataaggaatagtgttac 18768977  T
Q  213 ataaacatcatttaccctcatacatccttgtacacccatgtattaggaagagaaaaaatgagatgaaagagaaaatgtgttt 294  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  18768978 ataaacatcatttaccctcatacatccttgtacacccatgtattaggaagagaaaaaatgagatgaaagagaaaatgtgttt 18769059  T

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Target: chr4; HSP #2
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 230 - 290
Target Start/End: Complemental strand, 18769261 - 18769201
Alignment:
Q  230 tcatacatccttgtacacccatgtattaggaagagaaaaaatgagatgaaagagaaaatgt 290  Q
    |||||||  |||||||||||||||| ||| ||||||||||| |||||||||||||||||||    
T  18769261 tcatacactcttgtacacccatgtactagaaagagaaaaaaggagatgaaagagaaaatgt 18769201  T

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Target: chr2 (Bit Score: 66; Significance: 3e-29; HSPs: 7)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 201 - 294
Target Start/End: Original strand, 15428659 - 15428752
Alignment:
Q  201 gaatagtgttacataaacatcatttaccctcatacatccttgtacacccatgtattaggaagagaaaaaatgagatgaaagagaaaatgtgttt 294  Q
    ||||| ||||||||| |||||||||||||||||||| ||||||||||||||||| ||| ||||||||| | |||||||||||||||||||||||    
T  15428659 gaataatgttacatagacatcatttaccctcatacacccttgtacacccatgtactagaaagagaaaagaggagatgaaagagaaaatgtgttt 15428752  T

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Target: chr2; HSP #2
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 229 - 291
Target Start/End: Complemental strand, 41758741 - 41758678
Alignment:
Q  229 ctcatacatccttgtacaccc-atgtattaggaagagaaaaaatgagatgaaagagaaaatgtg 291  Q
    ||||||||||||||||||||| || ||||||||||||| || | ||||| ||||||||||||||    
T  41758741 ctcatacatccttgtacaccccatatattaggaagagagaagaggagataaaagagaaaatgtg 41758678  T

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Target: chr2; HSP #3
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 240 - 294
Target Start/End: Original strand, 17819961 - 17820016
Alignment:
Q  240 ttgtacacc-catgtattaggaagagaaaaaatgagatgaaagagaaaatgtgttt 294  Q
    ||||||||| |||| |||||||||||| || | |||||||||||||||||||||||    
T  17819961 ttgtacacctcatgcattaggaagagagaagaggagatgaaagagaaaatgtgttt 17820016  T

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Target: chr2; HSP #4
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 229 - 291
Target Start/End: Original strand, 33436046 - 33436109
Alignment:
Q  229 ctcatacatccttgtacacc-catgtattaggaagagaaaaaatgagatgaaagagaaaatgtg 291  Q
    |||||||| ||||||||||| |||| |||||||||||| || |||||| |||||||||| ||||    
T  33436046 ctcatacacccttgtacacctcatgcattaggaagagagaagatgagaggaaagagaaagtgtg 33436109  T

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Target: chr2; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 231 - 291
Target Start/End: Complemental strand, 17823940 - 17823879
Alignment:
Q  231 catacatccttgtacaccc-atgtattaggaagagaaaaaatgagatgaaagagaaaatgtg 291  Q
    |||||| |||||||||||| || |||| |||||||| || ||||||||||||||||| ||||    
T  17823940 catacacccttgtacaccccatatatttggaagagagaagatgagatgaaagagaaagtgtg 17823879  T

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Target: chr2; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 231 - 291
Target Start/End: Original strand, 28381603 - 28381664
Alignment:
Q  231 catacatccttgtacaccc-atgtattaggaagagaaaaaatgagatgaaagagaaaatgtg 291  Q
    ||||||||||||||||||| || ||||||||||||| || ||||||  ||||||||| ||||    
T  28381603 catacatccttgtacaccccatatattaggaagagagaagatgagagaaaagagaaagtgtg 28381664  T

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Target: chr2; HSP #7
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 231 - 291
Target Start/End: Complemental strand, 30915615 - 30915554
Alignment:
Q  231 catacatccttgtacaccc-atgtattaggaagagaaaaaatgagatgaaagagaaaatgtg 291  Q
    |||||| |||||||||||| |||||||||||||||| || ||||||  ||||||||| ||||    
T  30915615 catacacccttgtacaccccatgtattaggaagagagaagatgagagaaaagagaaagtgtg 30915554  T

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Target: chr3 (Bit Score: 53; Significance: 2e-21; HSPs: 5)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 202 - 294
Target Start/End: Original strand, 25395253 - 25395345
Alignment:
Q  202 aatagtgttacataaacatcatttaccctcatacatccttgtacacccatgtattaggaagagaaaaaatgagatgaaagagaaaatgtgttt 294  Q
    |||| ||||||||| ||||| |||| ||||||||||| ||||||||||||||| ||| ||||||||| |  ||||||||||||||||||||||    
T  25395253 aataatgttacatagacatcttttatcctcatacatctttgtacacccatgtactagaaagagaaaagagaagatgaaagagaaaatgtgttt 25395345  T

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Target: chr3; HSP #2
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 230 - 294
Target Start/End: Original strand, 1758404 - 1758468
Alignment:
Q  230 tcatacatccttgtacacccatgtattaggaagagaaaaaatgagatgaaagagaaaatgtgttt 294  Q
    ||||||| | ||||||||||||| |||||||||||| || | |||||||||||||||||||||||    
T  1758404 tcatacacctttgtacacccatgcattaggaagagagaagaggagatgaaagagaaaatgtgttt 1758468  T

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Target: chr3; HSP #3
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 207 - 291
Target Start/End: Original strand, 30801657 - 30801742
Alignment:
Q  207 tgttacataaacatcatttaccctcatacatccttgtacaccc-atgtattaggaagagaaaaaatgagatgaaagagaaaatgtg 291  Q
    ||||||||| ||| | ||||  |||||||| |||||||||||| ||||| |||||||||| || |||||| |||||||||||||||    
T  30801657 tgttacatagacaccttttattctcatacacccttgtacaccccatgtactaggaagagagaagatgagaggaaagagaaaatgtg 30801742  T

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Target: chr3; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 207 - 291
Target Start/End: Original strand, 20764839 - 20764924
Alignment:
Q  207 tgttacataaacatcatttaccctcatacatccttgtaca-cccatgtattaggaagagaaaaaatgagatgaaagagaaaatgtg 291  Q
    ||||||||| ||| ||||||  |||||||| ||||||||| |||||  |||||||||||| || ||||||  ||||||||| ||||    
T  20764839 tgttacatagacaccatttattctcatacacccttgtacaccccatacattaggaagagagaagatgagagaaaagagaaagtgtg 20764924  T

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Target: chr3; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 231 - 291
Target Start/End: Original strand, 21746136 - 21746197
Alignment:
Q  231 catacatccttgtacacc-catgtattaggaagagaaaaaatgagatgaaagagaaaatgtg 291  Q
    |||||| ||||||||||| ||| |||| |||||||| || ||||||||||||||||| ||||    
T  21746136 catacacccttgtacacctcatatatttggaagagagaagatgagatgaaagagaaagtgtg 21746197  T

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Target: chr6 (Bit Score: 34; Significance: 0.0000000004; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 230 - 294
Target Start/End: Original strand, 9379659 - 9379724
Alignment:
Q  230 tcatacatccttgtacaccc-atgtattaggaagagaaaaaatgagatgaaagagaaaatgtgttt 294  Q
    ||||||||||||||| |||  ||| ||||||||||||||| |  ||||||||||||||||||||||    
T  9379659 tcatacatccttgtataccttatgcattaggaagagaaaagagaagatgaaagagaaaatgtgttt 9379724  T

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Target: chr6; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 207 - 294
Target Start/End: Original strand, 31952954 - 31953042
Alignment:
Q  207 tgttacataaacatcatttaccctcatacatccttgtaca-cccatgtattaggaagagaaaaaatgagatgaaagagaaaatgtgttt 294  Q
    ||||||||| ||| ||||||  ||||||||||||| |||| |||||| | |||||||||| || |  |||||||||||||| |||||||    
T  31952954 tgttacatagacaccatttattctcatacatccttctacaccccatgcactaggaagagagaagagaagatgaaagagaaagtgtgttt 31953042  T

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Target: chr8 (Bit Score: 33; Significance: 0.000000002; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 68 - 167
Target Start/End: Original strand, 4666784 - 4666881
Alignment:
Q  68 aaatgttatttaaacaaccaaagcttgataacttaattcacaactatataaaaacatactatttttataactataaatttgactcgaggagagagaaaaa 167  Q
    ||||||||||| |||||||||| ||||| ||| || || ||||| ||||||||| | || |  |||||||||||  |||||||| ||||| |||||||||    
T  4666784 aaatgttatttgaacaaccaaaacttgacaacgtatttgacaaccatataaaaatacacca--tttataactattgatttgacttgaggaaagagaaaaa 4666881  T

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Target: chr8; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 207 - 291
Target Start/End: Complemental strand, 5958006 - 5957921
Alignment:
Q  207 tgttacataaacatcatttaccctcatacatccttgtacacc-catgtattaggaagagaaaaaatgagatgaaagagaaaatgtg 291  Q
    ||||||||||||| | ||||  |||||||| ||||||||||| |||| | |||||||||| || | |||| |||||||||| ||||    
T  5958006 tgttacataaacaccctttattctcatacacccttgtacacctcatgcactaggaagagagaagaggagaggaaagagaaagtgtg 5957921  T

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Target: chr8; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 231 - 291
Target Start/End: Complemental strand, 42221667 - 42221606
Alignment:
Q  231 catacatccttgtacaccc-atgtattaggaagagaaaaaatgagatgaaagagaaaatgtg 291  Q
    |||||| |||||||||||| || |||| |||||||| || ||||||||||||||||| ||||    
T  42221667 catacacccttgtacaccctatatatttggaagagagaagatgagatgaaagagaaagtgtg 42221606  T

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Target: chr5 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 207 - 294
Target Start/End: Complemental strand, 6679874 - 6679786
Alignment:
Q  207 tgttacataaacatcatttaccctcatacatccttgtacaccc-atgtattaggaagagaaaaaatgagatgaaagagaaaatgtgttt 294  Q
    ||||||||| ||||||||||   ||||||| |||||||||||| ||  |||||||||||| || | ||||  |||||||||||||||||    
T  6679874 tgttacatagacatcatttattgtcatacacccttgtacaccctatacattaggaagagagaagaggagagaaaagagaaaatgtgttt 6679786  T

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Target: chr7 (Bit Score: 31; Significance: 0.00000003; HSPs: 4)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 229 - 294
Target Start/End: Original strand, 4999460 - 4999526
Alignment:
Q  229 ctcatacatccttgtacaccc-atgtattaggaagagaaaaaatgagatgaaagagaaaatgtgttt 294  Q
    |||||||| |||||||||||| ||| |||||||||||| || | ||||| ||||||||| |||||||    
T  4999460 ctcatacacccttgtacaccccatgcattaggaagagagaagaggagataaaagagaaagtgtgttt 4999526  T

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Target: chr7; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 207 - 288
Target Start/End: Complemental strand, 41423858 - 41423776
Alignment:
Q  207 tgttacataaacatcatttaccctcatacatccttgtacaccc-atgtattaggaagagaaaaaatgagatgaaagagaaaat 288  Q
    ||||||||||||| | ||||  |||||||| | |||||||||| ||| | |||||||||| || | |||||||||||||||||    
T  41423858 tgttacataaacaccctttattctcatacacctttgtacaccccatgcactaggaagagagaagaggagatgaaagagaaaat 41423776  T

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Target: chr7; HSP #3
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 229 - 268
Target Start/End: Complemental strand, 36362168 - 36362128
Alignment:
Q  229 ctcatacatccttgtaca-cccatgtattaggaagagaaaa 268  Q
    |||||||| ||||||||| ||||||||||||||||||||||    
T  36362168 ctcatacacccttgtacatcccatgtattaggaagagaaaa 36362128  T

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Target: chr7; HSP #4
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 231 - 286
Target Start/End: Complemental strand, 38044349 - 38044293
Alignment:
Q  231 catacatccttgtacaccc-atgtattaggaagagaaaaaatgagatgaaagagaaa 286  Q
    |||||| |||||||||||| ||||||||||||||||||| |  ||| ||||||||||    
T  38044349 catacacccttgtacaccccatgtattaggaagagaaaagagaagaagaaagagaaa 38044293  T

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Target: scaffold0110 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: scaffold0110
Description:

Target: scaffold0110; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 207 - 290
Target Start/End: Original strand, 8787 - 8871
Alignment:
Q  207 tgttacataaacatcatttaccctcatacatccttgtacaccc-atgtattaggaagagaaaaaatgagatgaaagagaaaatgt 290  Q
    ||||||||| ||| | ||||  || ||||| |||||||||||| || ||||||||||||| || ||| || ||||||||||||||    
T  8787 tgttacatagacaccttttattcttatacacccttgtacaccccatatattaggaagagagaagatgggaggaaagagaaaatgt 8871  T

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Target: chr1 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 207 - 294
Target Start/End: Original strand, 45044484 - 45044572
Alignment:
Q  207 tgttacataaacatcatttaccctcatacatccttgtaca-cccatgtattaggaagagaaaaaatgagatgaaagagaaaatgtgttt 294  Q
    |||||| || ||||||||||  |||||||| ||||||||| |||||  |||||||||||| || |  |||  |||||||||||||||||    
T  45044484 tgttacgtagacatcatttattctcatacacccttgtacaccccatacattaggaagagagaagagaagagaaaagagaaaatgtgttt 45044572  T

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