View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19475_high_65 (Length: 268)
Name: NF19475_high_65
Description: NF19475
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19475_high_65 |
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| [»] chr7 (1 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 234; Significance: 1e-129; HSPs: 4)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 234; E-Value: 1e-129
Query Start/End: Original strand, 15 - 264
Target Start/End: Complemental strand, 4314544 - 4314295
Alignment:
| Q |
15 |
agattgttggtcagtgtttggaagtcatgcatgcctttctccaaaagaatacactgagaatatggatctccaaataattggcaaagagattgctagaaaa |
114 |
Q |
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| T |
4314544 |
agattgttggtcagtgtttggaaatcatgcatgcctttctccaaaagaatacactgagaatatggatcttcaaataattggcaaagagattgctagaaaa |
4314445 |
T |
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| Q |
115 |
tgtaagggattacctttagcagcacaatcacttgggggcttgttgcgaagtaaacgggacatcaatgactggaataatatactaaatagtaacatttggg |
214 |
Q |
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||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
4314444 |
tgtaagggattgcctttagcagcacaatcacttgggggcttgttgcgaagtaaacgggacatcaatgactggaataatatactaaatagtaacatttggg |
4314345 |
T |
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| Q |
215 |
aaaatgagagtaagatcattccagcactccgaattagttatcattatctc |
264 |
Q |
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| T |
4314344 |
aaaatgagagtaatatcattccagcactccgaattagttatcattatctc |
4314295 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 150; E-Value: 2e-79
Query Start/End: Original strand, 15 - 268
Target Start/End: Original strand, 4253942 - 4254195
Alignment:
| Q |
15 |
agattgttggtcagtgtttggaagtcatgcatgcctttctccaaaagaatacactgagaatatggatctccaaataattggcaaagagattgctagaaaa |
114 |
Q |
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| T |
4253942 |
agattgttggtcggtgtttgcaaaccatgcatgcctttctccagaagaaaccactgagaacatggatctccaaaaaattggcaaagagattgttagaaaa |
4254041 |
T |
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| Q |
115 |
tgtaagggattacctttagcagcacaatcacttgggggcttgttgcgaagtaaacgggacatcaatgactggaataatatactaaatagtaacatttggg |
214 |
Q |
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| T |
4254042 |
tgtaagggattgcctttagcagcacagtcatttgggggcttgttgcgacgtaaatgtgacataagggactggaataatatactcaatagtaacatctggg |
4254141 |
T |
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| Q |
215 |
aaaatgagagtaagatcattccagcactccgaattagttatcattatctccctc |
268 |
Q |
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| T |
4254142 |
aaaatgagagtaagatcattccagcactaaaaattagataccattatctccctc |
4254195 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 138; E-Value: 3e-72
Query Start/End: Original strand, 15 - 268
Target Start/End: Complemental strand, 4305682 - 4305429
Alignment:
| Q |
15 |
agattgttggtcagtgtttggaagtcatgcatgcctttctccaaaagaatacactgagaatatggatctccaaataattggcaaagagattgctagaaaa |
114 |
Q |
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| T |
4305682 |
agattgttggtctgtgtttgaaaaccatgcatgcctttctctaaaacactccattgagaaaatggaactccaaaaaattggcaaagagattattagaaaa |
4305583 |
T |
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| Q |
115 |
tgtaagggattacctttagcagcacaatcacttgggggcttgttgcgaagtaaacgggacatcaatgactggaataatatactaaatagtaacatttggg |
214 |
Q |
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| T |
4305582 |
tgtcaaggattgcctttagcagcacaatcacttgggggcttattgcgaagtaaacgtgacatcaaggattgcaataatatactaactagtaacatttggg |
4305483 |
T |
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| Q |
215 |
aaaatgagagtaagatcattccagcactccgaattagttatcattatctccctc |
268 |
Q |
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| T |
4305482 |
aaactgagagtaagattattcctgcactccaaatcagttaccattatctccctc |
4305429 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 107; E-Value: 1e-53
Query Start/End: Original strand, 15 - 257
Target Start/End: Original strand, 4246823 - 4247065
Alignment:
| Q |
15 |
agattgttggtcagtgtttggaagtcatgcatgcctttctccaaaagaatacactgagaatatggatctccaaataattggcaaagagattgctagaaaa |
114 |
Q |
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| T |
4246823 |
agattgttggtcagtgtttgcaatccatgcatgcctttcacccgaacaatccaccgagaagacggatctccaaaaaactggtagagagattgttagaaaa |
4246922 |
T |
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| Q |
115 |
tgtaagggattacctttagcagcacaatcacttgggggcttgttgcgaagtaaacgggacatcaatgactggaataatatactaaatagtaacatttggg |
214 |
Q |
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| T |
4246923 |
tgtaagggattgccattagcagcaaaatcacttggaggccttttgcgaagtacacatgacatcagtgattggaataatctactacatagtaacatttggg |
4247022 |
T |
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| Q |
215 |
aaaatgagagtaagatcattccagcactccgaattagttatca |
257 |
Q |
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| T |
4247023 |
aaactcagagtaagatcattccagcattgagaattagttatca |
4247065 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 159; Significance: 1e-84; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 159; E-Value: 1e-84
Query Start/End: Original strand, 15 - 265
Target Start/End: Original strand, 41933385 - 41933635
Alignment:
| Q |
15 |
agattgttggtcagtgtttggaagtcatgcatgcctttctccaaaagaatacactgagaatatggatctccaaataattggcaaagagattgctagaaaa |
114 |
Q |
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|||||||||||| ||||||| || ||||| || ||| ||||| |||||| | |||||| ||||||||||||| ||||||||||||||||| ||||||| |
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| T |
41933385 |
agattgttggtccgtgtttgcaaaccatgcctgtcttcctccagaagaatcctttgagaaaatggatctccaaaaaattggcaaagagattgttagaaaa |
41933484 |
T |
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| Q |
115 |
tgtaagggattacctttagcagcacaatcacttgggggcttgttgcgaagtaaacgggacatcaatgactggaataatatactaaatagtaacatttggg |
214 |
Q |
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||| ||||||| |||||||||||||||||||||||||||||||||||||||||||| || |||| |||||| || |||||||||||||||||||||||| |
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| T |
41933485 |
tgtcagggattgcctttagcagcacaatcacttgggggcttgttgcgaagtaaacgtaacctcaaggactgggatgatatactaaatagtaacatttggg |
41933584 |
T |
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| Q |
215 |
aaaatgagagtaagatcattccagcactccgaattagttatcattatctcc |
265 |
Q |
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| T |
41933585 |
aaaatgagagtaagatcattccagcactccgaatcagttatcattatctcc |
41933635 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 118; Significance: 3e-60; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 118; E-Value: 3e-60
Query Start/End: Original strand, 15 - 268
Target Start/End: Complemental strand, 34802620 - 34802367
Alignment:
| Q |
15 |
agattgttggtcagtgtttggaagtcatgcatgcctttctccaaaagaatacactgagaatatggatctccaaataattggcaaagagattgctagaaaa |
114 |
Q |
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||||||||||||||| || | || |||||||| ||||||||| || ||| |||||||||||||| |||||| | | ||| ||||||| ||||||| |
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| T |
34802620 |
agattgttggtcagttttcgcaaaccatgcatgtctttctccagaaaaatcttctgagaatatggatatccaaaaatacgccaaggagattgttagaaaa |
34802521 |
T |
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| Q |
115 |
tgtaagggattacctttagcagcacaatcacttgggggcttgttgcgaagtaaacgggacatcaatgactggaataatatactaaatagtaacatttggg |
214 |
Q |
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| T |
34802520 |
tgcaagggactgcctttagcagcacaatcactcgggggtttgttgcgaggtaaacgtgacatcagggattggaataatatactaaataataacatttggg |
34802421 |
T |
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| Q |
215 |
aaaatgagagtaagatcattccagcactccgaattagttatcattatctccctc |
268 |
Q |
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|||||||| ||||||||||||| ||||| |||||||||||||||||||||||| |
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| T |
34802420 |
aaaatgagtgtaagatcattccggcactatgaattagttatcattatctccctc |
34802367 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 32; Significance: 0.000000006; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 90 - 149
Target Start/End: Complemental strand, 6059901 - 6059842
Alignment:
| Q |
90 |
aattggcaaagagattgctagaaaatgtaagggattacctttagcagcacaatcacttgg |
149 |
Q |
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| T |
6059901 |
aattggccgagagattgttaaaaagtgcaagggattgcctttagcagcacaatcacttgg |
6059842 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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